Hb_001329_170

Information

Type -
Description -
Location Contig1329: 108131-108719
Sequence    

Annotation

kegg
ID zma:100193833
description lhcb7; light harvesting complex mesophyll7
nr
ID EMT03811.1
description Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
swissprot
ID P13851
description Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1
trembl
ID M8AH61
description Chlorophyll a-b binding protein, chloroplastic OS=Aegilops tauschii GN=F775_13010 PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09408: 108466-108678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_170 0.0 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
2 Hb_005048_110 0.2122716157 - - -
3 Hb_002321_040 0.244558476 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
4 Hb_002397_060 0.2707245554 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000111_400 0.2743430337 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
6 Hb_009620_090 0.2894149687 - - hypothetical protein L484_000980 [Morus notabilis]
7 Hb_126648_010 0.2986970837 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_007432_010 0.2989464621 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
9 Hb_051997_010 0.3000015976 - - -
10 Hb_000111_410 0.3015036952 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004522_020 0.3080896584 - - PREDICTED: uncharacterized protein LOC105646836 [Jatropha curcas]
12 Hb_000739_270 0.3098408081 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
13 Hb_011609_040 0.3099473257 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
14 Hb_000679_120 0.3136939658 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
15 Hb_007113_080 0.3175448314 - - PREDICTED: uncharacterized protein LOC105639553 isoform X1 [Jatropha curcas]
16 Hb_000640_050 0.3192020663 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
17 Hb_003902_060 0.3209662224 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
18 Hb_000808_120 0.3251253252 - - -
19 Hb_002986_080 0.3252284465 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
20 Hb_001454_070 0.325571682 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001329_170 Hb_001329_170 Hb_005048_110 Hb_005048_110 Hb_001329_170--Hb_005048_110 Hb_002321_040 Hb_002321_040 Hb_001329_170--Hb_002321_040 Hb_002397_060 Hb_002397_060 Hb_001329_170--Hb_002397_060 Hb_000111_400 Hb_000111_400 Hb_001329_170--Hb_000111_400 Hb_009620_090 Hb_009620_090 Hb_001329_170--Hb_009620_090 Hb_126648_010 Hb_126648_010 Hb_001329_170--Hb_126648_010 Hb_005048_110--Hb_126648_010 Hb_005048_110--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_005048_110--Hb_011609_040 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_005048_110--Hb_002397_060 Hb_002321_040--Hb_126648_010 Hb_002321_040--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_002321_040--Hb_013834_010 Hb_000640_050 Hb_000640_050 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050 Hb_002397_060--Hb_009620_090 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030 Hb_004163_020 Hb_004163_020 Hb_000111_400--Hb_004163_020 Hb_000349_190 Hb_000349_190 Hb_000111_400--Hb_000349_190 Hb_004116_120 Hb_004116_120 Hb_000111_400--Hb_004116_120 Hb_004129_080 Hb_004129_080 Hb_000111_400--Hb_004129_080 Hb_026527_040 Hb_026527_040 Hb_000111_400--Hb_026527_040 Hb_000926_230 Hb_000926_230 Hb_009620_090--Hb_000926_230 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_074836_010 Hb_074836_010 Hb_009620_090--Hb_074836_010 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_009620_090--Hb_000544_030 Hb_126648_010--Hb_011609_040 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12658 0.188327 4.23078 1.1451 0.579395 0.500196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.3392 0 0 0

CAGE analysis