Hb_001329_180

Information

Type -
Description -
Location Contig1329: 141074-142252
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11000g
description POPTRDRAFT_834837; S-adenosylmethionine synthetase 1 family protein
nr
ID XP_002320949.1
description S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
swissprot
ID A9P822
description S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1
trembl
ID A0A067JWS1
description S-adenosylmethionine synthase OS=Jatropha curcas GN=JCGZ_14093 PE=3 SV=1
Gene Ontology
ID GO:0004478
description s-adenosylmethionine synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09409: 139663-142575 , PASA_asmbl_09410: 139842-142680 , PASA_asmbl_09411: 140459-140873
cDNA
(Sanger)
(ID:Location)		 012_K22.ab1: 139666-141734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_180 0.0 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
2 Hb_000806_130 0.1007779456 - - Adenosine kinase 2 [Theobroma cacao]
3 Hb_026527_010 0.1212050118 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
4 Hb_001922_030 0.127010279 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
5 Hb_000236_190 0.1310697241 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
6 Hb_030565_100 0.1317362362 - - serine hydroxymethyltransferase, putative [Ricinus communis]
7 Hb_000300_420 0.1318580204 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
8 Hb_003470_110 0.1341428939 - - unnamed protein product [Vitis vinifera]
9 Hb_001119_070 0.1348289345 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
10 Hb_029223_040 0.135804882 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_000077_100 0.1386583421 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
12 Hb_000463_120 0.1461736742 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
13 Hb_000696_070 0.1487047347 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
14 Hb_000236_180 0.1525153501 - - serine hydroxymethyltransferase, putative [Ricinus communis]
15 Hb_031089_020 0.1531649635 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_000920_160 0.1540834879 - - annexin [Manihot esculenta]
17 Hb_001486_350 0.1565205314 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
18 Hb_000580_110 0.1637400776 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
19 Hb_006615_230 0.1649284866 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
20 Hb_004055_020 0.1653465605 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_180 Hb_001329_180 Hb_000806_130 Hb_000806_130 Hb_001329_180--Hb_000806_130 Hb_026527_010 Hb_026527_010 Hb_001329_180--Hb_026527_010 Hb_001922_030 Hb_001922_030 Hb_001329_180--Hb_001922_030 Hb_000236_190 Hb_000236_190 Hb_001329_180--Hb_000236_190 Hb_030565_100 Hb_030565_100 Hb_001329_180--Hb_030565_100 Hb_000300_420 Hb_000300_420 Hb_001329_180--Hb_000300_420 Hb_001486_350 Hb_001486_350 Hb_000806_130--Hb_001486_350 Hb_000696_070 Hb_000696_070 Hb_000806_130--Hb_000696_070 Hb_000806_130--Hb_000236_190 Hb_001119_070 Hb_001119_070 Hb_000806_130--Hb_001119_070 Hb_000806_130--Hb_000300_420 Hb_026527_010--Hb_000696_070 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_020805_140 Hb_020805_140 Hb_026527_010--Hb_020805_140 Hb_002701_090 Hb_002701_090 Hb_026527_010--Hb_002701_090 Hb_002781_050 Hb_002781_050 Hb_026527_010--Hb_002781_050 Hb_031089_020 Hb_031089_020 Hb_001922_030--Hb_031089_020 Hb_000920_160 Hb_000920_160 Hb_001922_030--Hb_000920_160 Hb_000120_940 Hb_000120_940 Hb_001922_030--Hb_000120_940 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_000236_190--Hb_000300_420 Hb_000236_190--Hb_001119_070 Hb_000236_190--Hb_001486_350 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000300_420--Hb_000077_100 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.7579 61.8941 183.533 899.393 21.0542 24.2858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.8153 59.1282 13.7519 245.769 326.912

CAGE analysis