Hb_001329_190

Information

Type -
Description -
Location Contig1329: 144514-145086
Sequence    

Annotation

kegg
ID rcu:RCOM_1343950
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002515203.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q94G86
description Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea GN=OLE9 PE=1 SV=1
trembl
ID B9RN64
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1343950 PE=4 SV=1
Gene Ontology
ID GO:0016787
description major pollen allergen ole e 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09412: 145481-152172 , PASA_asmbl_09413: 145481-152172
cDNA
(Sanger)
(ID:Location)		 042_P09.ab1: 145497-145633

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_190 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_004162_230 0.1908690124 - - PREDICTED: histone H2B [Jatropha curcas]
3 Hb_157022_030 0.1980832936 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
4 Hb_000739_270 0.2046636793 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
5 Hb_010488_040 0.2060957407 - - PREDICTED: phosphomannomutase [Populus euphratica]
6 Hb_011609_040 0.2083359905 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
7 Hb_013834_010 0.2158950432 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
8 Hb_005048_110 0.2178526691 - - -
9 Hb_000668_060 0.2221660462 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
10 Hb_126648_010 0.2268424855 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
11 Hb_001005_160 0.2277754832 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010998_050 0.2300566668 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
13 Hb_000926_230 0.2304021299 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000959_190 0.2305671999 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
15 Hb_032202_130 0.2357508237 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
16 Hb_000640_050 0.2370844752 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
17 Hb_002235_380 0.2375234143 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
18 Hb_001454_070 0.238563263 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
19 Hb_010436_080 0.240106803 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
20 Hb_036790_030 0.240373718 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001329_190 Hb_001329_190 Hb_004162_230 Hb_004162_230 Hb_001329_190--Hb_004162_230 Hb_157022_030 Hb_157022_030 Hb_001329_190--Hb_157022_030 Hb_000739_270 Hb_000739_270 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_011609_040 Hb_011609_040 Hb_001329_190--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_001329_190--Hb_013834_010 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_000139_490 Hb_000139_490 Hb_157022_030--Hb_000139_490 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040 Hb_000739_270--Hb_036790_030 Hb_008994_010 Hb_008994_010 Hb_000739_270--Hb_008994_010 Hb_000345_130 Hb_000345_130 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_000739_270--Hb_010998_050 Hb_001005_160 Hb_001005_160 Hb_010488_040--Hb_001005_160 Hb_000742_190 Hb_000742_190 Hb_010488_040--Hb_000742_190 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190 Hb_126648_010 Hb_126648_010 Hb_011609_040--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_011609_040--Hb_002321_040 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_000640_050 Hb_000640_050 Hb_011609_040--Hb_000640_050 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0.17195 0.986857 0.577064 0.152847 0.0737177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191899 0.150729 0 0.064345 0

CAGE analysis