Hb_001329_200

Information

Type transcription factor
Description TF Family: SBP
Location Contig1329: 145430-152411
Sequence    

Annotation

kegg
ID rcu:RCOM_1343940
description hypothetical protein
nr
ID XP_012082979.1
description PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
swissprot
ID Q9SMX9
description Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2
trembl
ID A0A067K935
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14095 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09412: 145481-152172 , PASA_asmbl_09413: 145481-152172 , PASA_asmbl_09414: 147344-147607 , PASA_asmbl_09415: 147694-148340 , PASA_asmbl_09416: 152460-152734
cDNA
(Sanger)
(ID:Location)		 042_P09.ab1: 145497-145633

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_200 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
2 Hb_009615_160 0.0522632289 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
3 Hb_007839_020 0.061044569 - - conserved hypothetical protein [Ricinus communis]
4 Hb_022425_060 0.0638372144 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
5 Hb_000802_090 0.064372353 - - ornithine aminotransferase, putative [Ricinus communis]
6 Hb_011360_050 0.0669845069 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
7 Hb_001328_080 0.0678794711 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
8 Hb_010407_080 0.0682226301 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
9 Hb_021165_010 0.0706127652 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
10 Hb_004517_020 0.0713914759 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
11 Hb_024650_080 0.0749369035 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
12 Hb_016172_030 0.0750895275 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
13 Hb_006006_040 0.0771876767 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
14 Hb_001408_110 0.0779317016 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
15 Hb_001114_110 0.078163197 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
16 Hb_026198_060 0.0807961882 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
17 Hb_000120_910 0.0808154737 - - plant ubiquilin, putative [Ricinus communis]
18 Hb_004994_240 0.0814896755 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
19 Hb_000008_240 0.0815117206 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000684_510 0.0821734619 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_200 Hb_001329_200 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_007839_020 Hb_007839_020 Hb_001329_200--Hb_007839_020 Hb_022425_060 Hb_022425_060 Hb_001329_200--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_001329_200--Hb_011360_050 Hb_001328_080 Hb_001328_080 Hb_001329_200--Hb_001328_080 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_005074_020 Hb_005074_020 Hb_009615_160--Hb_005074_020 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_007839_020--Hb_022425_060 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_022425_060--Hb_010407_080 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_000802_090--Hb_011360_050 Hb_002232_480 Hb_002232_480 Hb_000802_090--Hb_002232_480 Hb_003398_080 Hb_003398_080 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_000802_090--Hb_007839_020 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1194 59.0343 41.6678 51.6602 23.2095 22.3936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.648 19.2632 25.7955 43.215 30.4514

CAGE analysis