Hb_001329_210

Information

Type -
Description -
Location Contig1329: 157633-162618
Sequence    

Annotation

kegg
ID rcu:RCOM_1343920
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_002515200.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q41328
description Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2
trembl
ID B9RN61
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_1343920 PE=3 SV=1
Gene Ontology
ID GO:0004672
description pto-interacting protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09417: 157610-162635 , PASA_asmbl_09418: 157660-162635 , PASA_asmbl_09420: 157731-158073
cDNA
(Sanger)
(ID:Location)		 023_N10.ab1: 157748-159870 , 033_M22.ab1: 157676-160522 , 037_M04.ab1: 157748-160136 , 053_L21.ab1: 157610-160134

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_210 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_001278_050 0.072591394 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
3 Hb_001935_030 0.0882476098 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002078_460 0.091818641 - - -
5 Hb_007382_150 0.0943225559 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_002540_030 0.0968377969 - - hypothetical protein 32 [Hevea brasiliensis]
7 Hb_007666_020 0.1010961 - - alkaline phytoceramidase, putative [Ricinus communis]
8 Hb_000922_100 0.1038471474 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_001473_120 0.1071326705 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_001616_060 0.1078395546 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
11 Hb_000069_100 0.1082363799 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007021_020 0.1087194646 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
13 Hb_003504_020 0.1102183267 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
14 Hb_003929_120 0.1109562379 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
15 Hb_000329_330 0.1116579705 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
16 Hb_000196_090 0.1117927894 - - axonemal dynein light chain, putative [Ricinus communis]
17 Hb_002097_060 0.112035356 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_003893_090 0.1140352719 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_006831_030 0.1144500267 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
20 Hb_000722_040 0.11819359 - - -

Gene co-expression network

sample Hb_001329_210 Hb_001329_210 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_002078_460 Hb_002078_460 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_002540_030 Hb_002540_030 Hb_001329_210--Hb_002540_030 Hb_007666_020 Hb_007666_020 Hb_001329_210--Hb_007666_020 Hb_001278_050--Hb_002078_460 Hb_002936_050 Hb_002936_050 Hb_001278_050--Hb_002936_050 Hb_000032_220 Hb_000032_220 Hb_001278_050--Hb_000032_220 Hb_001278_050--Hb_007666_020 Hb_002897_060 Hb_002897_060 Hb_001278_050--Hb_002897_060 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001473_120 Hb_001473_120 Hb_001935_030--Hb_001473_120 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_002078_460--Hb_000032_220 Hb_007382_150--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_007666_020--Hb_000922_270 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.313 71.171 17.7641 50.9308 75.1176 154.464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
396.247 404.083 348.092 92.5474 16.3037

CAGE analysis