Hb_001329_220

Information

Type -
Description -
Location Contig1329: 164595-167486
Sequence    

Annotation

kegg
ID rcu:RCOM_1343900
description hypothetical protein
nr
ID XP_002515198.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN59
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343900 PE=4 SV=1
Gene Ontology
ID GO:0048573
description heat shock protein n-terminal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09423: 165583-165684 , PASA_asmbl_09424: 166312-167440 , PASA_asmbl_09425: 166318-167191 , PASA_asmbl_09428: 168034-168501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000169_010 0.0655352028 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_000500_090 0.0726892896 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
4 Hb_007254_040 0.0789163576 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
5 Hb_000032_570 0.0878492389 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
6 Hb_004048_070 0.088868126 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
7 Hb_004970_110 0.0896439774 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
8 Hb_003120_030 0.0902120795 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
9 Hb_001221_410 0.0910831594 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
10 Hb_005539_030 0.0920726586 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
11 Hb_000720_120 0.092569094 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
12 Hb_003392_040 0.0945403626 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
13 Hb_001824_070 0.0956815093 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
14 Hb_032717_080 0.0958346569 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
15 Hb_001135_050 0.0960249164 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_003020_230 0.098208124 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
17 Hb_000617_020 0.098250455 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
18 Hb_158092_070 0.098882965 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_000371_080 0.0988999065 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
20 Hb_005389_150 0.0990077728 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001329_220 Hb_001329_220 Hb_000169_010 Hb_000169_010 Hb_001329_220--Hb_000169_010 Hb_000500_090 Hb_000500_090 Hb_001329_220--Hb_000500_090 Hb_007254_040 Hb_007254_040 Hb_001329_220--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_001329_220--Hb_000032_570 Hb_004048_070 Hb_004048_070 Hb_001329_220--Hb_004048_070 Hb_004970_110 Hb_004970_110 Hb_001329_220--Hb_004970_110 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_000169_010--Hb_007254_040 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_002333_080 Hb_002333_080 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_000500_090--Hb_004970_110 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_004970_110 Hb_004048_070--Hb_007254_040 Hb_004048_070--Hb_001135_050 Hb_004048_070--Hb_005539_030 Hb_004970_110--Hb_007317_180 Hb_004970_110--Hb_005539_030 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_004970_110--Hb_000169_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6621 4.01896 3.5991 6.1392 18.9502 20.9456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5635 19.4775 11.5947 14.9384 3.2215

CAGE analysis