Hb_001329_230

Information

Type -
Description -
Location Contig1329: 167654-171506
Sequence    

Annotation

kegg
ID rcu:RCOM_1343870
description peptide chain release factor, putative
nr
ID XP_012082984.1
description PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
swissprot
ID Q2RWE1
description Peptide chain release factor 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=prfA PE=3 SV=1
trembl
ID A0A067JZX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14099 PE=3 SV=1
Gene Ontology
ID GO:0016149
description peptide chain release factor 1- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09426: 167565-167866 , PASA_asmbl_09427: 168027-171080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_230 0.0 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
2 Hb_003602_040 0.0791764066 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_006663_100 0.0852926918 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
4 Hb_009775_050 0.086534362 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
5 Hb_076787_010 0.0954515197 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
6 Hb_022137_060 0.0983294849 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
7 Hb_009118_010 0.1007695375 - - methionine aminopeptidase, putative [Ricinus communis]
8 Hb_005063_040 0.1014102242 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
9 Hb_011794_060 0.1031643262 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000028_030 0.103202814 - - amidase, putative [Ricinus communis]
11 Hb_000268_020 0.1034628473 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006922_080 0.1037833576 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
13 Hb_000179_170 0.1046668042 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
14 Hb_000705_260 0.1053883269 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003673_060 0.1062722736 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
16 Hb_000012_090 0.1079121956 - - 3'-5' exonuclease, putative [Ricinus communis]
17 Hb_000169_010 0.1094263566 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_007254_040 0.109964372 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
19 Hb_000076_120 0.1108232332 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
20 Hb_012760_170 0.1115736624 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_230 Hb_001329_230 Hb_003602_040 Hb_003602_040 Hb_001329_230--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_001329_230--Hb_006663_100 Hb_009775_050 Hb_009775_050 Hb_001329_230--Hb_009775_050 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_001329_230--Hb_022137_060 Hb_009118_010 Hb_009118_010 Hb_001329_230--Hb_009118_010 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_003602_040--Hb_006663_100 Hb_006663_100--Hb_022137_060 Hb_007894_140 Hb_007894_140 Hb_006663_100--Hb_007894_140 Hb_006663_100--Hb_012760_170 Hb_007590_080 Hb_007590_080 Hb_006663_100--Hb_007590_080 Hb_009775_050--Hb_009118_010 Hb_000268_020 Hb_000268_020 Hb_009775_050--Hb_000268_020 Hb_002272_180 Hb_002272_180 Hb_009775_050--Hb_002272_180 Hb_001341_050 Hb_001341_050 Hb_009775_050--Hb_001341_050 Hb_000076_120 Hb_000076_120 Hb_009775_050--Hb_000076_120 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_000085_060 Hb_000085_060 Hb_076787_010--Hb_000085_060 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_000179_170 Hb_000179_170 Hb_076787_010--Hb_000179_170 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_022137_060--Hb_012760_170 Hb_004608_020 Hb_004608_020 Hb_009118_010--Hb_004608_020 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1626 4.44175 6.97726 5.57722 23.8535 31.9733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.9659 11.5577 13.0914 11.7291 7.4756

CAGE analysis