Hb_001329_250

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1329: 177081-180949
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18900g
description POPTRDRAFT_409164; hypothetical protein
nr
ID XP_012082989.1
description PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14103 PE=4 SV=1
Gene Ontology
ID GO:0005515
description family transposase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09432: 176926-177240 , PASA_asmbl_09433: 178148-181799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_250 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
2 Hb_003498_080 0.0517195621 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
3 Hb_000212_420 0.0562768595 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
4 Hb_005214_140 0.0655524205 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
5 Hb_004044_050 0.0666060936 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
6 Hb_001828_170 0.067772187 - - PREDICTED: protein TPLATE [Jatropha curcas]
7 Hb_000270_190 0.069193456 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
8 Hb_003040_050 0.0696554596 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
9 Hb_001301_270 0.073707367 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
10 Hb_000773_040 0.0740837365 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
11 Hb_001776_020 0.0773045438 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
12 Hb_001440_020 0.0774622923 - - exocyst componenet sec8, putative [Ricinus communis]
13 Hb_012055_040 0.0774708793 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
14 Hb_009288_020 0.0776909546 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
15 Hb_000347_300 0.0784747662 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
16 Hb_073171_070 0.0787665591 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
17 Hb_002817_060 0.0795195881 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
18 Hb_000103_340 0.0795808263 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
19 Hb_012114_100 0.079626587 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_012518_070 0.0804515644 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_250 Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_003498_080--Hb_000212_420 Hb_001776_020 Hb_001776_020 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050 Hb_012114_100 Hb_012114_100 Hb_003498_080--Hb_012114_100 Hb_010315_020 Hb_010315_020 Hb_000212_420--Hb_010315_020 Hb_008014_040 Hb_008014_040 Hb_000212_420--Hb_008014_040 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_005214_140--Hb_000270_190 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_005214_140--Hb_004044_050 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_000103_340 Hb_000103_340 Hb_005214_140--Hb_000103_340 Hb_022425_030 Hb_022425_030 Hb_004044_050--Hb_022425_030 Hb_000347_300 Hb_000347_300 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_001828_170--Hb_000347_300 Hb_022425_060 Hb_022425_060 Hb_001828_170--Hb_022425_060 Hb_002817_060 Hb_002817_060 Hb_001828_170--Hb_002817_060 Hb_001828_170--Hb_022425_030 Hb_001828_170--Hb_003498_080 Hb_000773_040 Hb_000773_040 Hb_000270_190--Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000270_190--Hb_073171_070 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0712 4.63158 3.7784 5.42169 2.56256 2.90294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79618 1.88906 3.23993 2.84367 5.40457

CAGE analysis