Hb_001329_300

Information

Type -
Description -
Location Contig1329: 241457-244017
Sequence    

Annotation

kegg
ID rcu:RCOM_1343440
description cysteine desulfurylase, putative (EC:5.1.1.17)
nr
ID XP_012083006.1
description PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
swissprot
ID Q9M1R1
description L-cysteine desulfhydrase OS=Arabidopsis thaliana GN=LCD PE=2 SV=1
trembl
ID A0A067JWK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14112 PE=3 SV=1
Gene Ontology
ID GO:0003824
description l-cysteine desulfhydrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09454: 241601-244113 , PASA_asmbl_09455: 242241-242727 , PASA_asmbl_09456: 242560-244113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_300 0.0 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
2 Hb_000110_160 0.0516980725 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000567_260 0.0588625033 - - BnaA09g41440D [Brassica napus]
4 Hb_002006_090 0.0593307948 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
5 Hb_000614_230 0.0596162875 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
6 Hb_008066_010 0.0730652545 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
7 Hb_008695_210 0.0732657601 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
8 Hb_011918_080 0.0734183535 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_163145_020 0.0771991156 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
10 Hb_001051_100 0.0777265933 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
11 Hb_001248_130 0.0783359908 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
12 Hb_000001_140 0.0786766735 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
13 Hb_006915_050 0.0849162426 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
14 Hb_178968_110 0.0852428931 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
15 Hb_000840_210 0.0859264074 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
16 Hb_001085_170 0.087435571 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
17 Hb_000200_340 0.0897751745 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
18 Hb_002687_110 0.0900075617 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
19 Hb_189003_080 0.0903727705 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_000635_220 0.0917636762 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_300 Hb_001329_300 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_000567_260 Hb_000567_260 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000614_230--Hb_008695_210 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170 Hb_000069_460 Hb_000069_460 Hb_008066_010--Hb_000069_460 Hb_010710_030 Hb_010710_030 Hb_008066_010--Hb_010710_030 Hb_000221_270 Hb_000221_270 Hb_008066_010--Hb_000221_270 Hb_008066_010--Hb_000567_260 Hb_008695_210--Hb_006915_050 Hb_000907_080 Hb_000907_080 Hb_008695_210--Hb_000907_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8489 14.1668 6.53799 11.7827 30.0758 36.9006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.3073 32.0601 68.8431 19.0254 12.1238

CAGE analysis