Hb_001332_040

Information

Type -
Description -
Location Contig1332: 61263-67043
Sequence    

Annotation

kegg
ID fve:101305780
description transcription initiation factor IIB-like
nr
ID XP_004304334.1
description PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
swissprot
ID Q9SS44
description Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1
trembl
ID M5VR75
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008972mg PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor iib-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09472: 61181-66880
cDNA
(Sanger)
(ID:Location)		 004_E01.ab1: 61181-64016

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001332_040 0.0 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
2 Hb_000286_060 0.1081764163 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
3 Hb_003266_100 0.109011945 - - Isomerase protein [Gossypium arboreum]
4 Hb_016522_010 0.1145456202 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
5 Hb_000103_270 0.1155049515 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
6 Hb_000621_020 0.1156176253 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
7 Hb_004429_090 0.1158393879 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
8 Hb_000015_030 0.1177095137 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
9 Hb_003038_140 0.1193867198 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
10 Hb_001623_160 0.1194990671 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
11 Hb_105602_010 0.1205057961 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
12 Hb_009687_010 0.1231024804 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
13 Hb_001085_240 0.1294336163 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
14 Hb_005285_030 0.1305657876 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
15 Hb_002675_140 0.1314323711 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
16 Hb_004064_010 0.1320988618 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
17 Hb_000665_050 0.1321461882 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
18 Hb_002849_200 0.1321684496 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
19 Hb_001214_090 0.1323344447 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_001369_250 0.1324244376 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001332_040 Hb_001332_040 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_000227_070 Hb_000227_070 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_003266_100--Hb_000621_020 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000103_270--Hb_000096_160 Hb_005914_170 Hb_005914_170 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020 Hb_000621_020--Hb_004064_010 Hb_105602_010 Hb_105602_010 Hb_000621_020--Hb_105602_010 Hb_000621_020--Hb_109002_020 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000621_020--Hb_000103_270 Hb_001104_230 Hb_001104_230 Hb_004429_090--Hb_001104_230 Hb_004429_090--Hb_010560_050 Hb_001369_250 Hb_001369_250 Hb_004429_090--Hb_001369_250 Hb_001476_060 Hb_001476_060 Hb_004429_090--Hb_001476_060 Hb_000684_520 Hb_000684_520 Hb_004429_090--Hb_000684_520 Hb_001623_060 Hb_001623_060 Hb_004429_090--Hb_001623_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3245 8.20227 11.9709 22.0389 6.40831 7.66653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8254 24.6431 21.1785 53.2425 10.6342

CAGE analysis