Hb_001335_040

Information

Type -
Description -
Location Contig1335: 102651-103085
Sequence    

Annotation

kegg
ID rcu:RCOM_0879920
description hypothetical protein
nr
ID XP_002525015.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG96
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0879920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001335_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019053_050 0.1076792222 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_011900_040 0.1091993234 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
4 Hb_000083_260 0.1254724445 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003528_090 0.1358305571 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
6 Hb_006889_010 0.1388372852 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
7 Hb_001157_120 0.1391547477 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
8 Hb_002215_020 0.1400013029 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
9 Hb_000622_140 0.1435767808 - - conserved hypothetical protein [Ricinus communis]
10 Hb_141096_010 0.148038663 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
11 Hb_011081_010 0.1493431151 - - unnamed protein product [Coffea canephora]
12 Hb_003152_010 0.1495792316 - - -
13 Hb_003060_020 0.150173216 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_005539_330 0.1518083263 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
15 Hb_000012_340 0.1531305633 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
16 Hb_015183_090 0.1552019407 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
17 Hb_000243_240 0.1555433124 - - cytochrome P450 family protein [Populus trichocarpa]
18 Hb_001401_130 0.1566897296 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
19 Hb_133926_010 0.1573281308 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
20 Hb_103468_010 0.1585651952 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001335_040 Hb_001335_040 Hb_019053_050 Hb_019053_050 Hb_001335_040--Hb_019053_050 Hb_011900_040 Hb_011900_040 Hb_001335_040--Hb_011900_040 Hb_000083_260 Hb_000083_260 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120 Hb_016120_030 Hb_016120_030 Hb_019053_050--Hb_016120_030 Hb_004031_060 Hb_004031_060 Hb_019053_050--Hb_004031_060 Hb_001091_040 Hb_001091_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030 Hb_011900_040--Hb_000083_260 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_000083_260--Hb_000012_340 Hb_000816_170 Hb_000816_170 Hb_000083_260--Hb_000816_170 Hb_003607_040 Hb_003607_040 Hb_000083_260--Hb_003607_040 Hb_000083_260--Hb_006889_010 Hb_001123_080 Hb_001123_080 Hb_000083_260--Hb_001123_080 Hb_170597_010 Hb_170597_010 Hb_000083_260--Hb_170597_010 Hb_003060_020 Hb_003060_020 Hb_003528_090--Hb_003060_020 Hb_003528_090--Hb_001157_120 Hb_000816_090 Hb_000816_090 Hb_003528_090--Hb_000816_090 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_005396_020 Hb_005396_020 Hb_003528_090--Hb_005396_020 Hb_000327_350 Hb_000327_350 Hb_003528_090--Hb_000327_350 Hb_006970_180 Hb_006970_180 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_006889_010--Hb_005539_330 Hb_151436_010 Hb_151436_010 Hb_006889_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006889_010--Hb_085158_010 Hb_006603_010 Hb_006603_010 Hb_006889_010--Hb_006603_010 Hb_000243_240 Hb_000243_240 Hb_001157_120--Hb_000243_240 Hb_001157_120--Hb_003060_020 Hb_001157_120--Hb_000816_170 Hb_001157_120--Hb_005396_020 Hb_000244_290 Hb_000244_290 Hb_001157_120--Hb_000244_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0627758 0.293651 8.57385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.219586 0.282905 0.483289

CAGE analysis