Hb_001338_070

Information

Type -
Description -
Location Contig1338: 105747-109104
Sequence    

Annotation

kegg
ID -
description -
nr
ID YP_002720156.1
description ORF126 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID C0LEB8
description ORF126 OS=Jatropha curcas GN=ORF126 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ORF126

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09522: 109899-117724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_070 0.0 - - ORF126 [Jatropha curcas]
2 Hb_180985_010 0.1322222265 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
3 Hb_000482_160 0.148232552 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
4 Hb_002027_100 0.154244724 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001916_110 0.1564091797 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
6 Hb_185274_030 0.1595704146 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
7 Hb_005305_140 0.1600205663 - - unknown [Populus trichocarpa]
8 Hb_001864_050 0.161763782 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
9 Hb_006775_100 0.1642517663 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_000386_010 0.1652705629 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001442_050 0.1655471822 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
12 Hb_001662_090 0.1664237695 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005527_070 0.1692131897 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
14 Hb_001338_120 0.1694690497 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
15 Hb_005888_060 0.1739356651 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
16 Hb_003055_030 0.174612087 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
17 Hb_033312_120 0.1764903098 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
18 Hb_000928_100 0.1781105535 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_002561_040 0.1781224628 - - Photosynthetic electron transfer C [Theobroma cacao]
20 Hb_002805_200 0.1790512976 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]

Gene co-expression network

sample Hb_001338_070 Hb_001338_070 Hb_180985_010 Hb_180985_010 Hb_001338_070--Hb_180985_010 Hb_000482_160 Hb_000482_160 Hb_001338_070--Hb_000482_160 Hb_002027_100 Hb_002027_100 Hb_001338_070--Hb_002027_100 Hb_001916_110 Hb_001916_110 Hb_001338_070--Hb_001916_110 Hb_185274_030 Hb_185274_030 Hb_001338_070--Hb_185274_030 Hb_005305_140 Hb_005305_140 Hb_001338_070--Hb_005305_140 Hb_000188_010 Hb_000188_010 Hb_180985_010--Hb_000188_010 Hb_180985_010--Hb_000482_160 Hb_001864_050 Hb_001864_050 Hb_180985_010--Hb_001864_050 Hb_180985_010--Hb_001916_110 Hb_003921_020 Hb_003921_020 Hb_180985_010--Hb_003921_020 Hb_001287_020 Hb_001287_020 Hb_180985_010--Hb_001287_020 Hb_000482_160--Hb_001864_050 Hb_001338_120 Hb_001338_120 Hb_000482_160--Hb_001338_120 Hb_002805_200 Hb_002805_200 Hb_000482_160--Hb_002805_200 Hb_000281_120 Hb_000281_120 Hb_000482_160--Hb_000281_120 Hb_000482_160--Hb_005305_140 Hb_003651_030 Hb_003651_030 Hb_000482_160--Hb_003651_030 Hb_001442_050 Hb_001442_050 Hb_002027_100--Hb_001442_050 Hb_000483_470 Hb_000483_470 Hb_002027_100--Hb_000483_470 Hb_101133_040 Hb_101133_040 Hb_002027_100--Hb_101133_040 Hb_000345_400 Hb_000345_400 Hb_002027_100--Hb_000345_400 Hb_060534_010 Hb_060534_010 Hb_002027_100--Hb_060534_010 Hb_000294_020 Hb_000294_020 Hb_002027_100--Hb_000294_020 Hb_000749_140 Hb_000749_140 Hb_001916_110--Hb_000749_140 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_001916_110--Hb_002805_200 Hb_000340_280 Hb_000340_280 Hb_001916_110--Hb_000340_280 Hb_000928_100 Hb_000928_100 Hb_001916_110--Hb_000928_100 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030 Hb_000189_400 Hb_000189_400 Hb_185274_030--Hb_000189_400 Hb_007504_040 Hb_007504_040 Hb_185274_030--Hb_007504_040 Hb_007253_030 Hb_007253_030 Hb_185274_030--Hb_007253_030 Hb_008887_030 Hb_008887_030 Hb_185274_030--Hb_008887_030 Hb_005433_020 Hb_005433_020 Hb_185274_030--Hb_005433_020 Hb_004109_140 Hb_004109_140 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.463037 1.88972 17.2423 1.2955 0.427427 0.592651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 11.435

CAGE analysis