Hb_001338_160

Information

Type -
Description -
Location Contig1338: 139723-141828
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00102
description ndhF; NADH dehydrogenase subunit 5
nr
ID YP_004327708.1
description NADH dehydrogenase subunit 5 [Hevea brasiliensis]
swissprot
ID B1NWJ6
description NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta GN=ndhF PE=3 SV=1
trembl
ID F2X0G2
description NADH dehydrogenase subunit 5 OS=Hevea brasiliensis GN=ndhF PE=4 SV=1
Gene Ontology
ID GO:0009535
description nadh-plastoquinone oxidoreductase subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_160 0.0 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
2 Hb_001155_020 0.0794725613 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
3 Hb_003963_040 0.1136693699 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
4 Hb_001338_150 0.1297072934 - - hypothetical chloroplast RF1 [Dillenia indica]
5 Hb_162094_010 0.1483862228 - - RNA polymerase alpha subunit [Hevea brasiliensis]
6 Hb_003032_090 0.1490060108 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
7 Hb_002835_090 0.1546013236 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
8 Hb_004611_040 0.1553266835 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_072212_010 0.1569814817 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
10 Hb_005399_050 0.1671886611 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
11 Hb_007504_040 0.1744986865 - - hypothetical chloroplast RF2 [Fragaria iinumae]
12 Hb_007595_050 0.1760951894 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
13 Hb_006925_030 0.1866590866 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
14 Hb_005399_040 0.1877794899 - - RNA polymerase beta subunit [Hevea brasiliensis]
15 Hb_185274_020 0.1938613463 - - Ycf2 (chloroplast) [Andrographis paniculata]
16 Hb_003693_020 0.1967082112 - - Ycf1, partial (chloroplast) [Clusia rosea]
17 Hb_000395_090 0.1973949734 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
18 Hb_000254_120 0.1996094665 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000667_140 0.1997288813 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
20 Hb_003861_150 0.2006005298 - - hypothetical protein JCGZ_15167 [Jatropha curcas]

Gene co-expression network

sample Hb_001338_160 Hb_001338_160 Hb_001155_020 Hb_001155_020 Hb_001338_160--Hb_001155_020 Hb_003963_040 Hb_003963_040 Hb_001338_160--Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_001338_160--Hb_001338_150 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_003032_090 Hb_003032_090 Hb_001338_160--Hb_003032_090 Hb_002835_090 Hb_002835_090 Hb_001338_160--Hb_002835_090 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_001155_020--Hb_003963_040 Hb_004611_040 Hb_004611_040 Hb_001155_020--Hb_004611_040 Hb_001155_020--Hb_002835_090 Hb_001155_020--Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003963_040--Hb_003032_090 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_001338_150--Hb_003032_090 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_162094_010--Hb_003963_040 Hb_162094_010--Hb_001338_150 Hb_162094_010--Hb_003032_090 Hb_162094_010--Hb_001155_020 Hb_003693_060 Hb_003693_060 Hb_162094_010--Hb_003693_060 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_003032_090--Hb_000156_240 Hb_003032_090--Hb_002835_090 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31336 0.135262 1.57837 0.262657 0.37991 0.715799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0774348 0.0913698 0.0567685 0.0365758 6.44296

CAGE analysis