Hb_001341_030

Information

Type transcription factor
Description TF Family: LOB
Location Contig1341: 17032-18662
Sequence    

Annotation

kegg
ID tcc:TCM_041094
description LOB domain-containing protein 1
nr
ID XP_007015486.1
description LOB domain-containing protein 1 [Theobroma cacao]
swissprot
ID Q9LQR0
description LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1
trembl
ID A0A061GTD1
description LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_030 0.0 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
2 Hb_000373_270 0.0642102489 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
3 Hb_005147_110 0.0646475155 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_004310_060 0.0761165037 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_018663_020 0.0784295123 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
6 Hb_001975_070 0.0834419405 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
7 Hb_001969_040 0.0908773772 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_008725_250 0.0966971796 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000186_280 0.0979783901 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
10 Hb_000300_280 0.098689672 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
11 Hb_001009_050 0.0992558163 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
12 Hb_011609_030 0.0993056049 - - conserved hypothetical protein 13 [Hevea brasiliensis]
13 Hb_000236_320 0.0995631124 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
14 Hb_001226_180 0.1003581111 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
15 Hb_005914_230 0.1011224192 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
16 Hb_001623_550 0.1021514812 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
17 Hb_005144_040 0.1046002219 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
18 Hb_000879_140 0.1055358996 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
19 Hb_001141_080 0.105640754 - - PREDICTED: protein RDM1 [Jatropha curcas]
20 Hb_000462_150 0.1071081772 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_030 Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001341_030--Hb_000373_270 Hb_005147_110 Hb_005147_110 Hb_001341_030--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_001341_030--Hb_004310_060 Hb_018663_020 Hb_018663_020 Hb_001341_030--Hb_018663_020 Hb_001975_070 Hb_001975_070 Hb_001341_030--Hb_001975_070 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_000373_270--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_005147_110--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_005147_110--Hb_018663_020 Hb_004310_060--Hb_000300_280 Hb_004310_060--Hb_008725_250 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_001975_070--Hb_005147_110 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001975_070--Hb_000373_270 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_001969_040--Hb_000186_280 Hb_001969_040--Hb_003384_030 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.0677 18.9298 10.3703 9.03627 36.6024 47.8186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.712 17.6667 17.5736 17.9689 2.73852

CAGE analysis