Hb_001341_040

Information

Type -
Description -
Location Contig1341: 51829-55505
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15230g
description POPTRDRAFT_649070; hypothetical protein
nr
ID KDP44111.1
description hypothetical protein JCGZ_05578 [Jatropha curcas]
swissprot
ID Q6T486
description Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1
trembl
ID A0A067L6L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05578 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09683: 51724-55440 , PASA_asmbl_09684: 51959-52702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_040 0.0 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
2 Hb_011344_010 0.0857094334 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
3 Hb_000733_060 0.0925623245 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
4 Hb_000768_030 0.1002200073 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
5 Hb_000161_030 0.1043964021 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
6 Hb_006029_010 0.1057269249 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_002997_100 0.1066114342 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
8 Hb_128548_020 0.1085992643 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
9 Hb_023226_060 0.1124061418 - - unnamed protein product [Vitis vinifera]
10 Hb_001427_170 0.1139081761 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
11 Hb_005288_160 0.1167305889 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
12 Hb_001040_170 0.1187992976 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000175_490 0.1197849741 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
14 Hb_003097_190 0.1204933689 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
15 Hb_006478_110 0.1213232082 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
16 Hb_000107_100 0.1230523942 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
17 Hb_182026_010 0.1238355994 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
18 Hb_012654_010 0.1240476323 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
19 Hb_002377_050 0.1253131179 - - Agmatine deiminase, putative [Ricinus communis]
20 Hb_001057_010 0.1258234478 - - cation-transporting atpase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_001341_040 Hb_001341_040 Hb_011344_010 Hb_011344_010 Hb_001341_040--Hb_011344_010 Hb_000733_060 Hb_000733_060 Hb_001341_040--Hb_000733_060 Hb_000768_030 Hb_000768_030 Hb_001341_040--Hb_000768_030 Hb_000161_030 Hb_000161_030 Hb_001341_040--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_001341_040--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_001341_040--Hb_002997_100 Hb_001427_170 Hb_001427_170 Hb_011344_010--Hb_001427_170 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_011344_010--Hb_000733_060 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_000175_490 Hb_000175_490 Hb_000768_030--Hb_000175_490 Hb_000768_030--Hb_023226_060 Hb_003453_020 Hb_003453_020 Hb_000768_030--Hb_003453_020 Hb_004032_050 Hb_004032_050 Hb_000768_030--Hb_004032_050 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_006029_010--Hb_000733_060 Hb_002997_100--Hb_022256_040 Hb_002997_100--Hb_182026_010 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
192.925 68.8734 38.4765 36.2062 496.565 224.058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
169.45 112.998 178.034 55.6391 31.0072

CAGE analysis