Hb_001341_100

Information

Type -
Description -
Location Contig1341: 90670-93798
Sequence    

Annotation

kegg
ID rcu:RCOM_1399380
description hypothetical protein
nr
ID KDP44101.1
description hypothetical protein JCGZ_05568 [Jatropha curcas]
swissprot
ID Q9FKK6
description Exonuclease V, chloroplastic OS=Arabidopsis thaliana GN=At5g60370 PE=2 SV=1
trembl
ID A0A067L6K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05568 PE=4 SV=1
Gene Ontology
ID GO:0045145
description exonuclease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09691: 90629-90801 , PASA_asmbl_09692: 90922-92110 , PASA_asmbl_09693: 91460-93412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_100 0.0 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
2 Hb_004631_210 0.1027984565 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
3 Hb_004993_060 0.1121290738 - - -
4 Hb_001486_030 0.1124007805 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003442_070 0.1144055277 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
6 Hb_004064_010 0.1156501984 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
7 Hb_000465_300 0.1156863836 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
8 Hb_003266_100 0.1167964743 - - Isomerase protein [Gossypium arboreum]
9 Hb_023771_010 0.1170755897 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
10 Hb_001635_190 0.1213097284 - - RNA m5u methyltransferase, putative [Ricinus communis]
11 Hb_003994_260 0.1272541976 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
12 Hb_000749_050 0.1283601485 - - mitochondrial thioredoxin [Hevea brasiliensis]
13 Hb_000071_070 0.129015807 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
14 Hb_000684_040 0.1301875505 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
15 Hb_050847_050 0.1311817525 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
16 Hb_010775_040 0.1314012895 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
17 Hb_005285_030 0.1319804506 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
18 Hb_001214_090 0.1321104079 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
19 Hb_031910_020 0.1324484385 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
20 Hb_000251_030 0.1344236803 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001341_100 Hb_001341_100 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001486_030 Hb_001486_030 Hb_001341_100--Hb_001486_030 Hb_003442_070 Hb_003442_070 Hb_001341_100--Hb_003442_070 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_006538_080 Hb_006538_080 Hb_004631_210--Hb_006538_080 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_000549_040 Hb_000549_040 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001486_030--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_001486_030--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_003266_100 Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004064_010--Hb_000621_020 Hb_004064_010--Hb_109002_020 Hb_000749_050 Hb_000749_050 Hb_000465_300--Hb_000749_050 Hb_000173_470 Hb_000173_470 Hb_000465_300--Hb_000173_470 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000723_230 Hb_000723_230 Hb_000465_300--Hb_000723_230 Hb_000890_150 Hb_000890_150 Hb_000465_300--Hb_000890_150 Hb_002045_070 Hb_002045_070 Hb_000465_300--Hb_002045_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15634 3.71627 1.99175 2.30779 0.728668 0.854158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58749 3.58664 3.82634 4.93257 1.82607

CAGE analysis