Hb_001341_110

Information

Type -
Description -
Location Contig1341: 94179-96352
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05950g
description POPTRDRAFT_722895; hypothetical protein
nr
ID XP_012064865.1
description PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
swissprot
ID Q9SPL4
description Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1
trembl
ID B9HNV4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05950g PE=4 SV=2
Gene Ontology
ID GO:0045735
description vicilin-like antimicrobial peptides 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_110 0.0 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
2 Hb_001277_160 0.2542491302 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
3 Hb_021888_090 0.2555337763 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
4 Hb_075230_010 0.2764963653 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
5 Hb_001277_190 0.2784354518 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
6 Hb_000086_340 0.2793209134 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
7 Hb_005000_250 0.2857869624 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
8 Hb_031004_010 0.291795711 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
9 Hb_005709_010 0.293099558 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
10 Hb_000475_040 0.2991244989 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_001711_010 0.2992905081 - - -
12 Hb_009393_180 0.3001410682 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
13 Hb_089140_010 0.3009107185 - - -
14 Hb_002272_010 0.300942085 - - conserved hypothetical protein [Ricinus communis]
15 Hb_076038_010 0.3009685984 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001638_030 0.3030114074 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
17 Hb_013818_040 0.3036677137 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
18 Hb_001860_010 0.3041627462 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_001096_100 0.3045862218 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000731_230 0.3052498423 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001341_110 Hb_001341_110 Hb_001277_160 Hb_001277_160 Hb_001341_110--Hb_001277_160 Hb_021888_090 Hb_021888_090 Hb_001341_110--Hb_021888_090 Hb_075230_010 Hb_075230_010 Hb_001341_110--Hb_075230_010 Hb_001277_190 Hb_001277_190 Hb_001341_110--Hb_001277_190 Hb_000086_340 Hb_000086_340 Hb_001341_110--Hb_000086_340 Hb_005000_250 Hb_005000_250 Hb_001341_110--Hb_005000_250 Hb_076038_010 Hb_076038_010 Hb_001277_160--Hb_076038_010 Hb_000243_020 Hb_000243_020 Hb_001277_160--Hb_000243_020 Hb_001277_160--Hb_001277_190 Hb_007778_020 Hb_007778_020 Hb_001277_160--Hb_007778_020 Hb_004204_090 Hb_004204_090 Hb_001277_160--Hb_004204_090 Hb_011457_020 Hb_011457_020 Hb_021888_090--Hb_011457_020 Hb_117240_010 Hb_117240_010 Hb_021888_090--Hb_117240_010 Hb_002180_010 Hb_002180_010 Hb_021888_090--Hb_002180_010 Hb_003209_050 Hb_003209_050 Hb_021888_090--Hb_003209_050 Hb_000829_080 Hb_000829_080 Hb_021888_090--Hb_000829_080 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_078568_010 Hb_078568_010 Hb_075230_010--Hb_078568_010 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_127404_010 Hb_127404_010 Hb_001277_190--Hb_127404_010 Hb_003913_030 Hb_003913_030 Hb_001277_190--Hb_003913_030 Hb_001277_190--Hb_012634_020 Hb_149714_010 Hb_149714_010 Hb_000086_340--Hb_149714_010 Hb_000302_260 Hb_000302_260 Hb_000086_340--Hb_000302_260 Hb_000475_040 Hb_000475_040 Hb_000086_340--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_000086_340--Hb_000122_050 Hb_030116_010 Hb_030116_010 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_006907_100 Hb_006907_100 Hb_005000_250--Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_005000_250--Hb_000302_130 Hb_007136_010 Hb_007136_010 Hb_005000_250--Hb_007136_010 Hb_171718_020 Hb_171718_020 Hb_005000_250--Hb_171718_020 Hb_170674_010 Hb_170674_010 Hb_005000_250--Hb_170674_010 Hb_003305_030 Hb_003305_030 Hb_005000_250--Hb_003305_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0605229 0.125293 0.0442275 0.0228014 0 0.0125098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0650024 0.0255691 0 0.0204222 0

CAGE analysis