Hb_001341_130

Information

Type -
Description -
Location Contig1341: 103397-104134
Sequence    

Annotation

kegg
ID rcu:RCOM_1399730
description hypothetical protein
nr
ID XP_002526357.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SK38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1399730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09697: 103387-104106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000188_130 0.0613302778 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
3 Hb_001153_080 0.0843556037 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
4 Hb_000045_190 0.1016254812 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
5 Hb_002529_100 0.1097162151 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
6 Hb_003581_090 0.1135059391 - - PREDICTED: galactose oxidase [Jatropha curcas]
7 Hb_002759_230 0.1167690166 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
8 Hb_000798_030 0.1206120047 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
9 Hb_004724_140 0.1231394907 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
10 Hb_004116_080 0.1251965768 - - ATATH9, putative [Ricinus communis]
11 Hb_001045_080 0.1283305517 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
12 Hb_001623_240 0.1293951603 - - hypothetical protein VITISV_004933 [Vitis vinifera]
13 Hb_000634_050 0.1293990965 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
14 Hb_010172_070 0.1299018351 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
15 Hb_000521_150 0.1309233633 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
16 Hb_010710_020 0.1314167814 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
17 Hb_000023_230 0.1337193905 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
18 Hb_003018_120 0.1343387051 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
19 Hb_000161_050 0.1345163354 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004958_050 0.1345702561 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]

Gene co-expression network

sample Hb_001341_130 Hb_001341_130 Hb_000188_130 Hb_000188_130 Hb_001341_130--Hb_000188_130 Hb_001153_080 Hb_001153_080 Hb_001341_130--Hb_001153_080 Hb_000045_190 Hb_000045_190 Hb_001341_130--Hb_000045_190 Hb_002529_100 Hb_002529_100 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_002759_230 Hb_002759_230 Hb_001341_130--Hb_002759_230 Hb_000188_130--Hb_000045_190 Hb_000188_130--Hb_002759_230 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_000188_130--Hb_002529_100 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_000634_050 Hb_000634_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_000045_190--Hb_001045_080 Hb_000045_190--Hb_002529_100 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_092706_020 Hb_092706_020 Hb_003581_090--Hb_092706_020 Hb_002291_030 Hb_002291_030 Hb_003581_090--Hb_002291_030 Hb_003581_090--Hb_002759_230 Hb_003581_090--Hb_002529_100 Hb_000926_290 Hb_000926_290 Hb_003581_090--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_003581_090--Hb_001722_040 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002909_060 Hb_002909_060 Hb_002759_230--Hb_002909_060 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.404 4.7489 8.76263 3.44502 15.3495 11.6151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.4847 51.1932 20.771 9.2939 3.24551

CAGE analysis