Hb_001341_150

Information

Type -
Description -
Location Contig1341: 122215-125618
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010642mg
description hypothetical protein
nr
ID XP_012064864.1
description PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
swissprot
ID Q7DLR9
description Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2
trembl
ID A0A067LIM3
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_05566 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09698: 122246-125581
cDNA
(Sanger)
(ID:Location)		 002_E19.ab1: 122564-125581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_150 0.0 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
2 Hb_001931_010 0.053311539 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
3 Hb_010098_050 0.0578639837 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
4 Hb_006615_240 0.061129756 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
5 Hb_000457_180 0.0617862218 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_002078_140 0.0656162955 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
7 Hb_028396_010 0.0661142969 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_000045_310 0.0695228501 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
9 Hb_008071_020 0.0696500092 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
10 Hb_000431_170 0.0712069763 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_002226_060 0.0719374488 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
12 Hb_001016_150 0.071950929 - - Rop1 [Hevea brasiliensis]
13 Hb_001279_080 0.0721243282 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
14 Hb_006573_190 0.0723623889 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
15 Hb_000390_300 0.0737806854 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
16 Hb_003582_060 0.0765037868 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
17 Hb_006693_020 0.0767042815 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
18 Hb_000538_120 0.0774763979 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
19 Hb_011512_070 0.0782665463 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
20 Hb_002811_170 0.0783300642 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_150 Hb_001341_150 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_010098_050--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_000045_310 Hb_000045_310 Hb_028396_010--Hb_000045_310 Hb_028396_010--Hb_008071_020 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_028396_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.6537 60.0557 129.082 110.123 77.1543 71.2985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.709 208.82 97.5677 91.8526 64.8974

CAGE analysis