Hb_001341_170

Information

Type -
Description -
Location Contig1341: 169345-173410
Sequence    

Annotation

kegg
ID tcc:TCM_041075
description General transcription factor II H2 isoform 1
nr
ID XP_012064858.1
description PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
swissprot
ID Q86KZ2
description General transcription factor IIH subunit 2 OS=Dictyostelium discoideum GN=gtf2h2 PE=3 SV=2
trembl
ID A0A097PR13
description GTF2H2 (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09706: 169353-170594 , PASA_asmbl_09707: 171403-173405 , PASA_asmbl_09708: 170595-171567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_170 0.0 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
2 Hb_004724_150 0.0538890425 - - expressed protein, putative [Ricinus communis]
3 Hb_000225_040 0.0587477864 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
4 Hb_000890_210 0.0588380905 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
5 Hb_000556_160 0.0612695721 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_011485_070 0.0613512617 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
7 Hb_010618_010 0.0630642373 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_000792_010 0.0653096192 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
9 Hb_001198_100 0.0653235858 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
10 Hb_004994_220 0.0658787668 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_003253_040 0.0669741724 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_009218_010 0.0671006254 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
13 Hb_010174_110 0.0684353351 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_002942_100 0.0688451566 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
15 Hb_015934_040 0.068894482 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
16 Hb_000185_040 0.0690881736 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
17 Hb_000107_490 0.069296331 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_000083_120 0.0693424433 - - transcription factor, putative [Ricinus communis]
19 Hb_000028_480 0.0695273477 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
20 Hb_001199_100 0.0696751832 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_170 Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_004724_150--Hb_000297_010 Hb_000245_040 Hb_000245_040 Hb_004724_150--Hb_000245_040 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_004724_150--Hb_000556_160 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000890_210--Hb_000107_490 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000890_210--Hb_000245_040 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_000185_040 Hb_000185_040 Hb_011485_070--Hb_000185_040 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5485 13.164 6.64479 10.4784 12.9137 17.206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7786 13.1962 17.0368 16.5035 10.636

CAGE analysis