Hb_001341_190

Information

Type -
Description -
Location Contig1341: 186663-199458
Sequence    

Annotation

kegg
ID rcu:RCOM_1400460
description acyl-CoA dehydrogenase, putative (EC:1.3.99.10)
nr
ID XP_012064856.1
description PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
swissprot
ID Q9FS87
description Isovaleryl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum GN=IVD PE=1 SV=2
trembl
ID A0A067LA30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05560 PE=3 SV=1
Gene Ontology
ID GO:0016627
description isovaleryl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_190 0.0 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
2 Hb_000875_090 0.1109481996 - - hypothetical protein VITISV_005326 [Vitis vinifera]
3 Hb_007975_020 0.2431128901 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_002255_080 0.2438895459 - - -
5 Hb_001652_070 0.2558106242 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
6 Hb_007718_020 0.266926466 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
7 Hb_000659_090 0.3017178492 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_002311_260 0.3027981555 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
9 Hb_000117_150 0.3092682932 - - hypothetical protein RCOM_0079810 [Ricinus communis]
10 Hb_004021_020 0.3099767795 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
11 Hb_074670_010 0.3118418835 - - hypothetical protein VITISV_015625 [Vitis vinifera]
12 Hb_033683_020 0.3128419547 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
13 Hb_006237_030 0.3281498376 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002456_020 0.3288855491 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_000260_740 0.3305865032 - - -
16 Hb_002126_010 0.3328361368 - - predicted protein [Hordeum vulgare subsp. vulgare]
17 Hb_095937_010 0.3375069028 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_034359_010 0.3410467025 - - -
19 Hb_004662_020 0.3461481583 - - 40S ribosomal protein S9, putative [Ricinus communis]
20 Hb_125431_010 0.3463346662 - - -

Gene co-expression network

sample Hb_001341_190 Hb_001341_190 Hb_000875_090 Hb_000875_090 Hb_001341_190--Hb_000875_090 Hb_007975_020 Hb_007975_020 Hb_001341_190--Hb_007975_020 Hb_002255_080 Hb_002255_080 Hb_001341_190--Hb_002255_080 Hb_001652_070 Hb_001652_070 Hb_001341_190--Hb_001652_070 Hb_007718_020 Hb_007718_020 Hb_001341_190--Hb_007718_020 Hb_000659_090 Hb_000659_090 Hb_001341_190--Hb_000659_090 Hb_002126_010 Hb_002126_010 Hb_000875_090--Hb_002126_010 Hb_000875_090--Hb_007975_020 Hb_000875_090--Hb_007718_020 Hb_000875_090--Hb_002255_080 Hb_000094_030 Hb_000094_030 Hb_000875_090--Hb_000094_030 Hb_007975_020--Hb_002255_080 Hb_007975_020--Hb_000659_090 Hb_095937_010 Hb_095937_010 Hb_007975_020--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_007975_020--Hb_006237_030 Hb_145620_010 Hb_145620_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090 Hb_000117_150 Hb_000117_150 Hb_002255_080--Hb_000117_150 Hb_002255_080--Hb_001652_070 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_002639_010 Hb_002639_010 Hb_001652_070--Hb_002639_010 Hb_002456_020 Hb_002456_020 Hb_001652_070--Hb_002456_020 Hb_001652_070--Hb_000117_150 Hb_022819_010 Hb_022819_010 Hb_001652_070--Hb_022819_010 Hb_001146_050 Hb_001146_050 Hb_007718_020--Hb_001146_050 Hb_004878_010 Hb_004878_010 Hb_007718_020--Hb_004878_010 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_050034_010 Hb_050034_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_000771_090 Hb_000771_090 Hb_007718_020--Hb_000771_090 Hb_000659_090--Hb_006237_030 Hb_000659_090--Hb_095937_010 Hb_000659_090--Hb_145620_010 Hb_000421_280 Hb_000421_280 Hb_000659_090--Hb_000421_280 Hb_000811_090 Hb_000811_090 Hb_000659_090--Hb_000811_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.126932 0 0.0847458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0386074 0 0.124131 0.158249

CAGE analysis