Hb_001341_200

Information

Type transcription factor
Description TF Family: ARF
Location Contig1341: 200286-209429
Sequence    

Annotation

kegg
ID rcu:RCOM_1400470
description Auxin response factor, putative
nr
ID XP_012064855.1
description PREDICTED: auxin response factor 4 [Jatropha curcas]
swissprot
ID Q9ZTX9
description Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=1 SV=1
trembl
ID A0A067LHL5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_05557 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09712: 201154-201631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_200 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
2 Hb_009646_010 0.1111194412 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
3 Hb_005181_180 0.1113877287 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004495_020 0.125360064 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_029584_090 0.1279642766 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
6 Hb_004195_090 0.1315617382 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
7 Hb_000139_140 0.1383991987 - - Acyl-CoA synthetase [Ricinus communis]
8 Hb_003607_060 0.1386680719 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
9 Hb_000465_260 0.1398508274 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
10 Hb_002662_090 0.1447578999 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
11 Hb_002151_100 0.1465848576 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
12 Hb_000059_300 0.1515725599 - - caspase, putative [Ricinus communis]
13 Hb_003894_100 0.1519287147 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
14 Hb_002928_120 0.1542678292 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
15 Hb_001021_030 0.1582744162 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_000120_230 0.158744698 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
17 Hb_000056_280 0.1609677597 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
18 Hb_019863_030 0.1613337574 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
19 Hb_004586_240 0.1614451592 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
20 Hb_002928_180 0.1621665293 - - catalase CAT1 [Manihot esculenta]

Gene co-expression network

sample Hb_001341_200 Hb_001341_200 Hb_009646_010 Hb_009646_010 Hb_001341_200--Hb_009646_010 Hb_005181_180 Hb_005181_180 Hb_001341_200--Hb_005181_180 Hb_004495_020 Hb_004495_020 Hb_001341_200--Hb_004495_020 Hb_029584_090 Hb_029584_090 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_000139_140 Hb_000139_140 Hb_001341_200--Hb_000139_140 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_000702_060 Hb_000702_060 Hb_005181_180--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_005181_180--Hb_000684_360 Hb_003607_060 Hb_003607_060 Hb_005181_180--Hb_003607_060 Hb_000793_040 Hb_000793_040 Hb_005181_180--Hb_000793_040 Hb_001900_060 Hb_001900_060 Hb_005181_180--Hb_001900_060 Hb_004495_020--Hb_029584_090 Hb_004495_020--Hb_000139_140 Hb_004495_020--Hb_003607_060 Hb_004495_020--Hb_005181_180 Hb_002026_080 Hb_002026_080 Hb_004495_020--Hb_002026_080 Hb_000963_200 Hb_000963_200 Hb_029584_090--Hb_000963_200 Hb_032631_050 Hb_032631_050 Hb_029584_090--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_029584_090--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_029584_090--Hb_002025_350 Hb_009736_010 Hb_009736_010 Hb_004195_090--Hb_009736_010 Hb_004195_090--Hb_029584_090 Hb_030944_010 Hb_030944_010 Hb_004195_090--Hb_030944_010 Hb_000059_300 Hb_000059_300 Hb_004195_090--Hb_000059_300 Hb_004195_090--Hb_032631_050 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_000139_140--Hb_009646_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.974305 12.2621 5.0182 13.234 0.982255 1.11837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40466 2.5408 1.95439 17.5004 2.77051

CAGE analysis