Hb_001342_050

Information

Type -
Description -
Location Contig1342: 121288-125072
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001342_050 0.0 - - -
2 Hb_171065_010 0.2527152602 - - Ribonuclease H protein [Theobroma cacao]
3 Hb_001143_260 0.2770748478 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
4 Hb_001789_170 0.2819831314 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
5 Hb_002498_130 0.2822135497 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
6 Hb_000781_050 0.2827260631 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_011356_020 0.2849021344 - - -
8 Hb_000392_290 0.2871617197 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_139691_010 0.2999958321 - - -
10 Hb_024247_020 0.3023388436 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
11 Hb_012586_030 0.3030711345 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
12 Hb_008035_050 0.3033536417 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
13 Hb_003659_020 0.3051809054 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_043623_020 0.3133018813 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
15 Hb_000184_200 0.3242341648 - - -
16 Hb_002513_050 0.3251343076 - - hypothetical protein F383_14794 [Gossypium arboreum]
17 Hb_061637_010 0.3304149865 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_003581_190 0.3332471975 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
19 Hb_010435_020 0.3395184072 - - PREDICTED: uncharacterized protein LOC104216897 [Nicotiana sylvestris]
20 Hb_000264_220 0.3396625928 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]

Gene co-expression network

sample Hb_001342_050 Hb_001342_050 Hb_171065_010 Hb_171065_010 Hb_001342_050--Hb_171065_010 Hb_001143_260 Hb_001143_260 Hb_001342_050--Hb_001143_260 Hb_001789_170 Hb_001789_170 Hb_001342_050--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_001342_050--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_001342_050--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001342_050--Hb_011356_020 Hb_000982_140 Hb_000982_140 Hb_171065_010--Hb_000982_140 Hb_003581_190 Hb_003581_190 Hb_171065_010--Hb_003581_190 Hb_004881_100 Hb_004881_100 Hb_171065_010--Hb_004881_100 Hb_134015_010 Hb_134015_010 Hb_171065_010--Hb_134015_010 Hb_006726_010 Hb_006726_010 Hb_171065_010--Hb_006726_010 Hb_043623_020 Hb_043623_020 Hb_001143_260--Hb_043623_020 Hb_002513_050 Hb_002513_050 Hb_001143_260--Hb_002513_050 Hb_000876_040 Hb_000876_040 Hb_001143_260--Hb_000876_040 Hb_001221_280 Hb_001221_280 Hb_001143_260--Hb_001221_280 Hb_000184_200 Hb_000184_200 Hb_001143_260--Hb_000184_200 Hb_009615_080 Hb_009615_080 Hb_001143_260--Hb_009615_080 Hb_001789_170--Hb_002498_130 Hb_001789_170--Hb_000781_050 Hb_000392_290 Hb_000392_290 Hb_001789_170--Hb_000392_290 Hb_001789_170--Hb_011356_020 Hb_139691_010 Hb_139691_010 Hb_001789_170--Hb_139691_010 Hb_008035_050 Hb_008035_050 Hb_001789_170--Hb_008035_050 Hb_002498_130--Hb_000781_050 Hb_002498_130--Hb_011356_020 Hb_002498_130--Hb_000392_290 Hb_024247_020 Hb_024247_020 Hb_002498_130--Hb_024247_020 Hb_002498_130--Hb_139691_010 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_000392_290 Hb_000781_050--Hb_024247_020 Hb_000781_050--Hb_139691_010 Hb_011356_020--Hb_024247_020 Hb_011356_020--Hb_000392_290 Hb_011356_020--Hb_139691_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.16579 0 0.10547 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.657866 0.0397021 0

CAGE analysis