Hb_001343_020

Information

Type -
Description -
Location Contig1343: 8172-9640
Sequence    

Annotation

kegg
ID rcu:RCOM_0261010
description Transporter ATM1, mitochondrial precursor, putative (EC:3.6.3.44)
nr
ID AIU41633.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LVM1
description ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1
trembl
ID A0A097P9Q8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB25 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09733: 6977-8491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_020 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000548_060 0.1125113881 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
3 Hb_000368_120 0.1176495286 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
4 Hb_000264_280 0.1224948622 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_000175_050 0.1257689153 - - -
6 Hb_011053_030 0.1259647306 - - -
7 Hb_000032_390 0.1260031297 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
8 Hb_001649_030 0.1271625522 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
9 Hb_001269_500 0.1316089185 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
10 Hb_126917_010 0.1352842471 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
11 Hb_007904_040 0.1365042102 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
12 Hb_000152_480 0.1410272581 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
13 Hb_000032_400 0.1410961338 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
14 Hb_003664_030 0.1432834162 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
15 Hb_003171_030 0.145854116 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
16 Hb_002232_380 0.1476359622 - - malate dehydrogenase, putative [Ricinus communis]
17 Hb_000834_080 0.1486931781 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
18 Hb_014361_110 0.1495716108 - - RNA binding protein, putative [Ricinus communis]
19 Hb_006829_080 0.1501608754 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_000834_060 0.1504063516 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001343_020 Hb_001343_020 Hb_000548_060 Hb_000548_060 Hb_001343_020--Hb_000548_060 Hb_000368_120 Hb_000368_120 Hb_001343_020--Hb_000368_120 Hb_000264_280 Hb_000264_280 Hb_001343_020--Hb_000264_280 Hb_000175_050 Hb_000175_050 Hb_001343_020--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_001343_020--Hb_011053_030 Hb_000032_390 Hb_000032_390 Hb_001343_020--Hb_000032_390 Hb_014361_110 Hb_014361_110 Hb_000548_060--Hb_014361_110 Hb_036790_120 Hb_036790_120 Hb_000548_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000548_060--Hb_007426_170 Hb_010128_020 Hb_010128_020 Hb_000548_060--Hb_010128_020 Hb_001959_060 Hb_001959_060 Hb_000548_060--Hb_001959_060 Hb_003029_020 Hb_003029_020 Hb_000548_060--Hb_003029_020 Hb_011114_020 Hb_011114_020 Hb_000368_120--Hb_011114_020 Hb_003664_030 Hb_003664_030 Hb_000368_120--Hb_003664_030 Hb_000442_070 Hb_000442_070 Hb_000368_120--Hb_000442_070 Hb_000368_120--Hb_000175_050 Hb_003948_020 Hb_003948_020 Hb_000368_120--Hb_003948_020 Hb_000264_280--Hb_003664_030 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000045_050 Hb_000045_050 Hb_000032_390--Hb_000045_050 Hb_003494_030 Hb_003494_030 Hb_000032_390--Hb_003494_030 Hb_006829_080 Hb_006829_080 Hb_000032_390--Hb_006829_080 Hb_000684_430 Hb_000684_430 Hb_000032_390--Hb_000684_430 Hb_000193_220 Hb_000193_220 Hb_000032_390--Hb_000193_220 Hb_004055_160 Hb_004055_160 Hb_000032_390--Hb_004055_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128936 0.441806 0.996479 0.495757 0.148309 0.0552413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274348 0.359404 0.12691 0.117469 2.10808

CAGE analysis