Hb_001343_070

Information

Type -
Description -
Location Contig1343: 77692-78599
Sequence    

Annotation

kegg
ID fve:101292883
description pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like
nr
ID XP_012077755.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SSR4
description Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
trembl
ID A0A067L5R9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24352 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
2 Hb_002909_030 0.0001820204 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
3 Hb_000733_140 0.003513163 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
4 Hb_001545_090 0.0048385357 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
5 Hb_001689_060 0.0058855354 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
6 Hb_000235_020 0.0087984991 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002918_100 0.009879223 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
8 Hb_000032_110 0.0099982262 - - nadhp hc toxin reductase, putative [Ricinus communis]
9 Hb_001973_020 0.0115149473 - - -
10 Hb_023930_010 0.0118471625 - - hypothetical protein RCOM_0641040 [Ricinus communis]
11 Hb_006277_040 0.0120712445 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
12 Hb_001660_110 0.0122949438 - - amino acid transporter, putative [Ricinus communis]
13 Hb_184500_020 0.0128336064 - - -
14 Hb_053709_020 0.0129354329 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_000853_320 0.0133472333 - - -
16 Hb_002292_060 0.0139720216 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
17 Hb_000039_130 0.0148951434 - - -
18 Hb_003841_010 0.0149923273 - - -
19 Hb_128935_010 0.0152832332 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
20 Hb_000494_140 0.017011687 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]

Gene co-expression network

sample Hb_001343_070 Hb_001343_070 Hb_002909_030 Hb_002909_030 Hb_001343_070--Hb_002909_030 Hb_000733_140 Hb_000733_140 Hb_001343_070--Hb_000733_140 Hb_001545_090 Hb_001545_090 Hb_001343_070--Hb_001545_090 Hb_001689_060 Hb_001689_060 Hb_001343_070--Hb_001689_060 Hb_000235_020 Hb_000235_020 Hb_001343_070--Hb_000235_020 Hb_002918_100 Hb_002918_100 Hb_001343_070--Hb_002918_100 Hb_002909_030--Hb_000733_140 Hb_002909_030--Hb_001545_090 Hb_002909_030--Hb_001689_060 Hb_002909_030--Hb_000235_020 Hb_002909_030--Hb_002918_100 Hb_000733_140--Hb_001689_060 Hb_000733_140--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_000733_140--Hb_000032_110 Hb_023930_010 Hb_023930_010 Hb_000733_140--Hb_023930_010 Hb_001545_090--Hb_000235_020 Hb_001973_020 Hb_001973_020 Hb_001545_090--Hb_001973_020 Hb_006277_040 Hb_006277_040 Hb_001545_090--Hb_006277_040 Hb_001660_110 Hb_001660_110 Hb_001545_090--Hb_001660_110 Hb_001689_060--Hb_002918_100 Hb_001689_060--Hb_000032_110 Hb_001689_060--Hb_023930_010 Hb_000235_020--Hb_001973_020 Hb_000235_020--Hb_006277_040 Hb_000235_020--Hb_001660_110 Hb_000853_320 Hb_000853_320 Hb_000235_020--Hb_000853_320 Hb_002292_060 Hb_002292_060 Hb_000235_020--Hb_002292_060 Hb_002918_100--Hb_000032_110 Hb_002918_100--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_002918_100--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_002918_100--Hb_053709_020 Hb_000039_130 Hb_000039_130 Hb_002918_100--Hb_000039_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0366063 0.0893751 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis