Hb_001343_120

Information

Type -
Description -
Location Contig1343: 109555-116932
Sequence    

Annotation

kegg
ID rcu:RCOM_1027400
description hypothetical protein
nr
ID XP_002526384.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P72777
description Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1
trembl
ID B9SK65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027400 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ycf54-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09738: 109459-116805 , PASA_asmbl_09739: 112782-112965
cDNA
(Sanger)
(ID:Location)		 007_C24.ab1: 109730-116805 , 045_G10.ab1: 109704-116805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000042_390 0.1027224209 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
3 Hb_002435_090 0.1035147507 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_001975_050 0.1138115985 - - Tyrosine-specific transport protein, putative [Ricinus communis]
5 Hb_000207_140 0.1179972525 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
6 Hb_004218_050 0.120432437 - - annexin [Manihot esculenta]
7 Hb_002540_060 0.1227942257 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
8 Hb_000028_150 0.1232290484 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_012653_010 0.1260604853 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_000169_070 0.1305613896 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
11 Hb_004855_070 0.1357132596 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
12 Hb_188739_010 0.1405409036 - - protein binding protein, putative [Ricinus communis]
13 Hb_003470_100 0.1409257022 - - protein binding protein, putative [Ricinus communis]
14 Hb_002942_120 0.142459344 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
15 Hb_000110_240 0.1510868069 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
16 Hb_027654_070 0.152178922 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004007_170 0.1541399942 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_002999_030 0.1543509106 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
19 Hb_003397_030 0.154421613 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_002794_040 0.1555782484 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]

Gene co-expression network

sample Hb_001343_120 Hb_001343_120 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_002435_090 Hb_002435_090 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_000207_140 Hb_000207_140 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_001536_020 Hb_001536_020 Hb_000042_390--Hb_001536_020 Hb_001347_030 Hb_001347_030 Hb_000042_390--Hb_001347_030 Hb_012653_010 Hb_012653_010 Hb_000042_390--Hb_012653_010 Hb_107078_010 Hb_107078_010 Hb_000042_390--Hb_107078_010 Hb_000494_010 Hb_000494_010 Hb_000042_390--Hb_000494_010 Hb_002435_090--Hb_000207_140 Hb_188739_010 Hb_188739_010 Hb_002435_090--Hb_188739_010 Hb_003992_050 Hb_003992_050 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_000207_140--Hb_188739_010 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_004218_050--Hb_012653_010 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002540_060--Hb_002435_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96355 8.5403 107.172 20.7821 4.14486 6.64313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44155 2.73839 0.855855 6.27957 36.8974

CAGE analysis