Hb_001347_040

Information

Type -
Description -
Location Contig1347: 23919-27454
Sequence    

Annotation

kegg
ID rcu:RCOM_1064630
description hypothetical protein
nr
ID XP_012072010.1
description PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
swissprot
ID A5DK49
description Altered inheritance of mitochondria protein 32 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=AIM32 PE=3 SV=2
trembl
ID A0A067LGD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09774: 23923-27371 , PASA_asmbl_09775: 28336-32247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001347_040 0.0 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
2 Hb_131646_010 0.0563120675 - - protein arginine n-methyltransferase, putative [Ricinus communis]
3 Hb_143395_010 0.0634171738 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_001377_070 0.0644283491 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003124_220 0.0660555547 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
6 Hb_000256_190 0.0670116677 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
7 Hb_002078_110 0.0673244898 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
8 Hb_008159_020 0.0677199909 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
9 Hb_002835_230 0.0680514737 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_002686_250 0.0746010727 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
11 Hb_004209_020 0.0746678411 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
12 Hb_004195_200 0.0766489277 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
13 Hb_000680_090 0.0767392136 - - Protein SEY1, putative [Ricinus communis]
14 Hb_000120_430 0.0798186341 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
15 Hb_004235_080 0.0803427328 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
16 Hb_002304_090 0.0814998641 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
17 Hb_000538_100 0.0815272389 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004785_100 0.081556236 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000832_090 0.0818896888 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
20 Hb_002375_010 0.082098487 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001347_040 Hb_001347_040 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_002686_250 Hb_002686_250 Hb_131646_010--Hb_002686_250 Hb_004785_100 Hb_004785_100 Hb_131646_010--Hb_004785_100 Hb_002835_230 Hb_002835_230 Hb_131646_010--Hb_002835_230 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_131646_010--Hb_002078_110 Hb_007416_300 Hb_007416_300 Hb_143395_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_143395_010--Hb_010381_090 Hb_143395_010--Hb_003124_220 Hb_003964_070 Hb_003964_070 Hb_143395_010--Hb_003964_070 Hb_143395_010--Hb_131646_010 Hb_000116_060 Hb_000116_060 Hb_001377_070--Hb_000116_060 Hb_008159_020 Hb_008159_020 Hb_001377_070--Hb_008159_020 Hb_111198_010 Hb_111198_010 Hb_001377_070--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_001377_070--Hb_000732_120 Hb_008511_030 Hb_008511_030 Hb_001377_070--Hb_008511_030 Hb_000718_070 Hb_000718_070 Hb_003124_220--Hb_000718_070 Hb_003124_220--Hb_002078_110 Hb_003124_220--Hb_131646_010 Hb_003124_220--Hb_000256_190 Hb_006916_040 Hb_006916_040 Hb_000256_190--Hb_006916_040 Hb_004631_180 Hb_004631_180 Hb_000256_190--Hb_004631_180 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003549_150 Hb_003549_150 Hb_000256_190--Hb_003549_150 Hb_002078_110--Hb_002835_230 Hb_002078_110--Hb_002686_250 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.919 32.5117 27.1046 25.1661 49.7474 44.0931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7535 25.5106 24.2761 26.2104 11.8968

CAGE analysis