Hb_001347_060

Information

Type -
Description -
Location Contig1347: 35261-44106
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G006700g
description hypothetical protein
nr
ID XP_012072043.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID P48809
description Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2
trembl
ID A0A067LNH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10255 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09779: 35275-38174 , PASA_asmbl_09780: 38948-39937 , PASA_asmbl_09781: 40425-44071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001347_060 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_000347_430 0.0678971224 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
3 Hb_008033_040 0.0732010874 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
4 Hb_004108_160 0.0796979846 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
5 Hb_001936_090 0.0801205122 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
6 Hb_000363_310 0.0821769088 - - DNA topoisomerase type I, putative [Ricinus communis]
7 Hb_000406_200 0.0825422576 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
8 Hb_001789_110 0.0845803892 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000099_160 0.0847959064 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
10 Hb_005976_080 0.0862983866 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
11 Hb_188281_040 0.0869576849 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
12 Hb_028487_070 0.0884539599 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000720_050 0.0894047804 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
14 Hb_015675_040 0.0899283454 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
15 Hb_000375_390 0.0904548833 - - poly-A binding protein, putative [Ricinus communis]
16 Hb_000773_040 0.0913993312 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
17 Hb_000645_280 0.0922255597 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
18 Hb_000046_540 0.0936599983 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_000441_090 0.0939070142 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
20 Hb_000212_230 0.0944358704 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001347_060 Hb_001347_060 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001936_090 Hb_001936_090 Hb_001347_060--Hb_001936_090 Hb_000363_310 Hb_000363_310 Hb_001347_060--Hb_000363_310 Hb_000406_200 Hb_000406_200 Hb_001347_060--Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000347_430--Hb_000363_310 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_001304_110 Hb_001304_110 Hb_008033_040--Hb_001304_110 Hb_003943_110 Hb_003943_110 Hb_008033_040--Hb_003943_110 Hb_027073_020 Hb_027073_020 Hb_008033_040--Hb_027073_020 Hb_001716_040 Hb_001716_040 Hb_008033_040--Hb_001716_040 Hb_008033_040--Hb_000363_310 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_000406_200--Hb_000138_100 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81708 9.2807 12.3984 14.3262 13.4217 8.6619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2479 13.3705 10.9977 12.9574 22.3218

CAGE analysis