Hb_001348_010

Information

Type -
Description -
Location Contig1348: 1784-4492
Sequence    

Annotation

kegg
ID rcu:RCOM_1032080
description LysM domain GPI-anchored protein 1 precursor, putative
nr
ID XP_012078223.1
description PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
swissprot
ID Q93ZH0
description LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1
trembl
ID A0A067KKK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09784: 1802-4499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_010 0.0 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
2 Hb_002292_080 0.0861271186 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_000310_110 0.1035414068 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
4 Hb_000997_240 0.1107557783 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
5 Hb_012395_050 0.1174358651 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
6 Hb_001138_070 0.1178978726 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
7 Hb_001085_190 0.122537937 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_001597_030 0.1235802554 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
9 Hb_012518_080 0.1240306193 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
10 Hb_009189_100 0.1240366716 - - PREDICTED: patellin-6 [Jatropha curcas]
11 Hb_003935_040 0.1258606311 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
12 Hb_000735_020 0.1316224802 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_002276_250 0.1330760473 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
14 Hb_000162_190 0.1346740596 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
15 Hb_032260_060 0.1350119039 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
16 Hb_015934_080 0.1377120011 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
17 Hb_001936_180 0.1379524892 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
18 Hb_000431_100 0.1382895117 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
19 Hb_000011_370 0.1398838208 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
20 Hb_000093_090 0.1405612705 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]

Gene co-expression network

sample Hb_001348_010 Hb_001348_010 Hb_002292_080 Hb_002292_080 Hb_001348_010--Hb_002292_080 Hb_000310_110 Hb_000310_110 Hb_001348_010--Hb_000310_110 Hb_000997_240 Hb_000997_240 Hb_001348_010--Hb_000997_240 Hb_012395_050 Hb_012395_050 Hb_001348_010--Hb_012395_050 Hb_001138_070 Hb_001138_070 Hb_001348_010--Hb_001138_070 Hb_001085_190 Hb_001085_190 Hb_001348_010--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_002292_080--Hb_012518_080 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_000735_020 Hb_000735_020 Hb_002292_080--Hb_000735_020 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_009189_100 Hb_009189_100 Hb_000310_110--Hb_009189_100 Hb_000310_110--Hb_003935_040 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_000310_110--Hb_000162_190 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230 Hb_002999_080 Hb_002999_080 Hb_000997_240--Hb_002999_080 Hb_005000_280 Hb_005000_280 Hb_000997_240--Hb_005000_280 Hb_029142_040 Hb_029142_040 Hb_000997_240--Hb_029142_040 Hb_155444_010 Hb_155444_010 Hb_000997_240--Hb_155444_010 Hb_000997_240--Hb_012395_050 Hb_012395_050--Hb_155444_010 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_012395_050--Hb_029142_040 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_000645_160 Hb_000645_160 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_001085_190--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11381 1.52258 8.22819 13.7922 0.0210404 0.0717477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123455 0.0388541 0.514581 4.92731 3.4811

CAGE analysis