Hb_001348_050

Information

Type -
Description -
Location Contig1348: 31636-36226
Sequence    

Annotation

kegg
ID rcu:RCOM_1191090
description hypothetical protein
nr
ID XP_002516337.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFE9
description GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1
trembl
ID B9RRG8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1191090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09789: 31664-36207 , PASA_asmbl_09792: 34126-34327 , PASA_asmbl_09793: 33847-34094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000236_380 0.0813547148 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
3 Hb_000592_080 0.0875562642 - - PREDICTED: thymidylate kinase [Jatropha curcas]
4 Hb_014361_100 0.0906026958 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
5 Hb_140171_010 0.0927545538 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
6 Hb_000329_390 0.0938546824 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_007592_030 0.0979187882 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_002400_470 0.0982131248 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000618_030 0.1010466128 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
10 Hb_011174_090 0.1019708569 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
11 Hb_000042_270 0.102955899 - - myosin vIII, putative [Ricinus communis]
12 Hb_002587_020 0.1036921647 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000481_040 0.1047038983 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
14 Hb_000710_020 0.1051749764 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
15 Hb_004994_040 0.1054786217 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_003813_040 0.1056838995 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
17 Hb_002255_050 0.1061376043 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_000010_090 0.1073086236 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
19 Hb_004837_190 0.1080140547 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
20 Hb_030827_030 0.1086586682 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_050 Hb_001348_050 Hb_000236_380 Hb_000236_380 Hb_001348_050--Hb_000236_380 Hb_000592_080 Hb_000592_080 Hb_001348_050--Hb_000592_080 Hb_014361_100 Hb_014361_100 Hb_001348_050--Hb_014361_100 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_000329_390 Hb_000329_390 Hb_001348_050--Hb_000329_390 Hb_007592_030 Hb_007592_030 Hb_001348_050--Hb_007592_030 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_000592_080--Hb_008864_110 Hb_000592_080--Hb_002400_470 Hb_001047_030 Hb_001047_030 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000710_020 Hb_000710_020 Hb_000592_080--Hb_000710_020 Hb_014361_100--Hb_000329_390 Hb_014361_100--Hb_000236_380 Hb_001584_290 Hb_001584_290 Hb_014361_100--Hb_001584_290 Hb_000322_090 Hb_000322_090 Hb_014361_100--Hb_000322_090 Hb_000042_270 Hb_000042_270 Hb_014361_100--Hb_000042_270 Hb_005730_030 Hb_005730_030 Hb_140171_010--Hb_005730_030 Hb_140171_010--Hb_002255_050 Hb_007188_070 Hb_007188_070 Hb_140171_010--Hb_007188_070 Hb_002928_060 Hb_002928_060 Hb_140171_010--Hb_002928_060 Hb_033834_010 Hb_033834_010 Hb_140171_010--Hb_033834_010 Hb_004204_080 Hb_004204_080 Hb_140171_010--Hb_004204_080 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_002997_100 Hb_002997_100 Hb_000329_390--Hb_002997_100 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9696 26.7117 47.9558 38.5331 97.7403 80.6155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.6384 24.5861 66.735 26.3597 17.3856

CAGE analysis