Hb_001348_070

Information

Type -
Description -
Location Contig1348: 42210-44145
Sequence    

Annotation

kegg
ID tcc:TCM_035106
description Uncharacterized protein isoform 1
nr
ID XP_007019048.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FH94
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035106 PE=4 SV=1
Gene Ontology
ID GO:0005739
description Uncharacterized protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09795: 42219-44124
cDNA
(Sanger)
(ID:Location)		 048_I20.ab1: 42344-44126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_070 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_002687_140 0.0562343074 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
3 Hb_007154_020 0.0692127385 - - -
4 Hb_003752_080 0.0757472168 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
5 Hb_001564_130 0.0766432044 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000670_020 0.0797553262 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
7 Hb_002233_150 0.0800641608 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
8 Hb_001352_090 0.0817076663 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
9 Hb_000808_250 0.0822488531 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
10 Hb_003292_040 0.085582387 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
11 Hb_003687_230 0.0867847565 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
12 Hb_019962_030 0.0871475832 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
13 Hb_010661_030 0.0873622015 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
14 Hb_010368_020 0.0876602702 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
15 Hb_007007_050 0.0877042551 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
16 Hb_003849_060 0.08818032 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
17 Hb_022250_030 0.088731763 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000462_140 0.0898114821 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
19 Hb_001512_060 0.0918645722 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
20 Hb_007576_040 0.0924170175 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]

Gene co-expression network

sample Hb_001348_070 Hb_001348_070 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_001348_070--Hb_002233_150 Hb_002687_140--Hb_003752_080 Hb_000808_250 Hb_000808_250 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_003752_080--Hb_002233_150 Hb_001047_100 Hb_001047_100 Hb_003752_080--Hb_001047_100 Hb_002495_070 Hb_002495_070 Hb_003752_080--Hb_002495_070 Hb_001405_120 Hb_001405_120 Hb_003752_080--Hb_001405_120 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_001564_130--Hb_000670_020 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_000670_020--Hb_003292_040 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_000670_020--Hb_011970_030 Hb_000670_020--Hb_010368_020 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_002233_150--Hb_010661_030 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.6614 29.5369 50.8668 17.0327 89.1073 58.8973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.2189 85.5704 32.4251 24.1834 19.426

CAGE analysis