Hb_001348_090

Information

Type -
Description -
Location Contig1348: 78116-85644
Sequence    

Annotation

kegg
ID rcu:RCOM_1032290
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_012078234.1
description PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
swissprot
ID Q9CAP8
description Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1
trembl
ID A0A067K9M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12089 PE=4 SV=1
Gene Ontology
ID GO:0016020
description long chain acyl- synthetase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09809: 78175-85683 , PASA_asmbl_09810: 81267-81362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_090 0.0 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
2 Hb_002005_040 0.0785573228 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_002374_450 0.0904832445 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
4 Hb_004055_160 0.0913383851 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
5 Hb_004242_170 0.0941016195 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
6 Hb_024677_010 0.0969141248 - - superoxide dismutase [fe], putative [Ricinus communis]
7 Hb_000441_050 0.1013153276 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
8 Hb_004710_020 0.1072807346 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
9 Hb_001053_020 0.1190923799 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
10 Hb_000108_150 0.1193349209 - - alpha/beta hydrolase, putative [Ricinus communis]
11 Hb_000951_120 0.1205741508 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
12 Hb_164926_010 0.1219658585 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
13 Hb_005977_060 0.123580158 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002044_160 0.12359743 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
15 Hb_008616_040 0.1246152969 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
16 Hb_000516_080 0.1247070394 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
17 Hb_005914_210 0.1263537278 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
18 Hb_000042_050 0.1267516417 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
19 Hb_158092_100 0.1273355896 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
20 Hb_010984_010 0.1277785622 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_090 Hb_001348_090 Hb_002005_040 Hb_002005_040 Hb_001348_090--Hb_002005_040 Hb_002374_450 Hb_002374_450 Hb_001348_090--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050 Hb_002005_040--Hb_004055_160 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_002374_450--Hb_000441_050 Hb_002374_450--Hb_004242_170 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_004055_160--Hb_000684_430 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_006829_080 Hb_006829_080 Hb_004055_160--Hb_006829_080 Hb_004055_160--Hb_005116_100 Hb_004242_170--Hb_000441_050 Hb_001053_020 Hb_001053_020 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_024677_010--Hb_002374_450 Hb_024677_010--Hb_002005_040 Hb_000516_080 Hb_000516_080 Hb_024677_010--Hb_000516_080 Hb_001250_020 Hb_001250_020 Hb_024677_010--Hb_001250_020 Hb_007765_130 Hb_007765_130 Hb_024677_010--Hb_007765_130 Hb_000441_050--Hb_005977_060 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53946 9.76532 40.6873 33.0249 5.7582 14.249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85033 3.28433 5.031 13.6905 73.7443

CAGE analysis