Hb_001348_100

Information

Type -
Description -
Location Contig1348: 91129-92600
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08440g
description POPTRDRAFT_551458; hypothetical protein
nr
ID XP_012078236.1
description PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09811: 91058-92909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_100 0.0 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
2 Hb_000522_160 0.0894749667 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_006693_010 0.0907734226 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
4 Hb_159809_040 0.091304521 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000538_290 0.0951340645 - - hypothetical protein RCOM_0303940 [Ricinus communis]
6 Hb_006810_040 0.0956569052 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_000297_210 0.1012809829 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
8 Hb_007126_010 0.1016958201 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_000359_100 0.1034799249 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000020_050 0.104169807 - - PREDICTED: expansin-A6 [Jatropha curcas]
11 Hb_002203_010 0.1059263862 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
12 Hb_001971_040 0.1072118657 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
13 Hb_005542_150 0.1082690382 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
14 Hb_001524_120 0.1097950643 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
15 Hb_000431_100 0.1108579111 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
16 Hb_005276_190 0.1120558052 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
17 Hb_000576_140 0.1129981494 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
18 Hb_005332_030 0.1136482134 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000187_050 0.1136489003 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
20 Hb_000701_020 0.1142120164 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_100 Hb_001348_100 Hb_000522_160 Hb_000522_160 Hb_001348_100--Hb_000522_160 Hb_006693_010 Hb_006693_010 Hb_001348_100--Hb_006693_010 Hb_159809_040 Hb_159809_040 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_006810_040 Hb_006810_040 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210 Hb_000522_160--Hb_006810_040 Hb_000522_160--Hb_006693_010 Hb_005332_030 Hb_005332_030 Hb_000522_160--Hb_005332_030 Hb_000522_160--Hb_159809_040 Hb_001971_040 Hb_001971_040 Hb_000522_160--Hb_001971_040 Hb_006693_010--Hb_001971_040 Hb_000020_050 Hb_000020_050 Hb_006693_010--Hb_000020_050 Hb_006693_010--Hb_006810_040 Hb_006693_010--Hb_005332_030 Hb_159809_040--Hb_005332_030 Hb_159809_040--Hb_006810_040 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_000977_190 Hb_000977_190 Hb_159809_040--Hb_000977_190 Hb_002686_320 Hb_002686_320 Hb_000538_290--Hb_002686_320 Hb_009113_020 Hb_009113_020 Hb_000538_290--Hb_009113_020 Hb_000538_290--Hb_006810_040 Hb_000701_020 Hb_000701_020 Hb_000538_290--Hb_000701_020 Hb_000538_290--Hb_000977_190 Hb_000538_290--Hb_000187_050 Hb_006810_040--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_006810_040--Hb_005332_030 Hb_004122_010 Hb_004122_010 Hb_000297_210--Hb_004122_010 Hb_005181_170 Hb_005181_170 Hb_000297_210--Hb_005181_170 Hb_007632_160 Hb_007632_160 Hb_000297_210--Hb_007632_160 Hb_005675_050 Hb_005675_050 Hb_000297_210--Hb_005675_050 Hb_005276_190 Hb_005276_190 Hb_000297_210--Hb_005276_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.029915 1.12628 19.2189 16.7467 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.275427 0.108282 0 3.28886 3.581

CAGE analysis