Hb_001348_120

Information

Type -
Description -
Location Contig1348: 102855-104219
Sequence    

Annotation

kegg
ID tcc:TCM_025281
description Phloem protein 2-B10, putative
nr
ID XP_007029416.1
description Phloem protein 2-B10, putative [Theobroma cacao]
swissprot
ID Q3E6P4
description F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1
trembl
ID A0A061EZ24
description Phloem protein 2-B10, putative OS=Theobroma cacao GN=TCM_025281 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_120 0.0 - - Phloem protein 2-B10, putative [Theobroma cacao]
2 Hb_000163_210 0.126114472 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
3 Hb_000083_090 0.1312639281 - - immunophilin, putative [Ricinus communis]
4 Hb_000084_320 0.136198726 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
5 Hb_000260_200 0.1482589378 - - -
6 Hb_000836_130 0.148898175 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
7 Hb_000178_120 0.1496771729 - - PREDICTED: histone H2B [Jatropha curcas]
8 Hb_002774_050 0.1511934648 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
9 Hb_004209_030 0.151346484 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
10 Hb_001314_040 0.1523357184 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
11 Hb_007441_260 0.1540278639 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
12 Hb_005000_180 0.1554739953 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
13 Hb_000445_490 0.1574603638 - - -
14 Hb_001096_030 0.1584726684 - - uridylate kinase plant, putative [Ricinus communis]
15 Hb_001153_020 0.1592457699 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
16 Hb_021443_080 0.159506113 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
17 Hb_001357_120 0.1607460886 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
18 Hb_000928_130 0.1608465951 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_005527_040 0.1618053554 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
20 Hb_007317_160 0.1640141205 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001348_120 Hb_001348_120 Hb_000163_210 Hb_000163_210 Hb_001348_120--Hb_000163_210 Hb_000083_090 Hb_000083_090 Hb_001348_120--Hb_000083_090 Hb_000084_320 Hb_000084_320 Hb_001348_120--Hb_000084_320 Hb_000260_200 Hb_000260_200 Hb_001348_120--Hb_000260_200 Hb_000836_130 Hb_000836_130 Hb_001348_120--Hb_000836_130 Hb_000178_120 Hb_000178_120 Hb_001348_120--Hb_000178_120 Hb_000163_210--Hb_000083_090 Hb_000163_210--Hb_000260_200 Hb_012539_020 Hb_012539_020 Hb_000163_210--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_000163_210--Hb_000389_080 Hb_005000_180 Hb_005000_180 Hb_000163_210--Hb_005000_180 Hb_000069_140 Hb_000069_140 Hb_000163_210--Hb_000069_140 Hb_000083_090--Hb_000260_200 Hb_001424_020 Hb_001424_020 Hb_000083_090--Hb_001424_020 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040 Hb_000084_320--Hb_000836_130 Hb_010931_050 Hb_010931_050 Hb_000084_320--Hb_010931_050 Hb_000784_030 Hb_000784_030 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000260_200--Hb_000069_140 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_000260_200--Hb_012539_020 Hb_000836_130--Hb_000784_030 Hb_001135_210 Hb_001135_210 Hb_000836_130--Hb_001135_210 Hb_001357_120 Hb_001357_120 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000099_130 Hb_000099_130 Hb_000836_130--Hb_000099_130 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_002042_080 Hb_002042_080 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6143 6.97703 16.6104 17.6038 14.9088 2.20272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.6027 88.6264 63.9832 21.1695 19.384

CAGE analysis