Hb_001348_140

Information

Type -
Description -
Location Contig1348: 120945-122380
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_002513763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NPT8
description F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1
trembl
ID B9RJ44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09814: 121025-122302
cDNA
(Sanger)
(ID:Location)		 002_O02.ab1: 121026-121914 , 013_A21.ab1: 121031-121879 , 019_A14.ab1: 121031-121887 , 039_I11.ab1: 121025-121885

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000640_210 0.0905068153 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
3 Hb_000500_290 0.0909853879 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_005028_010 0.0919367432 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
5 Hb_000264_060 0.0951098404 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
6 Hb_002728_020 0.0953287821 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
7 Hb_009615_110 0.0959243598 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_001227_110 0.0976090642 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
9 Hb_002025_140 0.1009916196 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_000025_750 0.1038993583 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
11 Hb_164010_020 0.1051001143 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
12 Hb_000322_170 0.1092190399 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
13 Hb_005271_070 0.1092996952 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_001009_050 0.1093454943 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_010298_020 0.1104520252 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
16 Hb_001140_080 0.1114626388 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
17 Hb_004232_010 0.112175258 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
18 Hb_005333_020 0.112601387 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
19 Hb_001956_120 0.1126849842 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000566_140 0.1131900145 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_140 Hb_001348_140 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_000500_290 Hb_000500_290 Hb_001348_140--Hb_000500_290 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_002728_020 Hb_002728_020 Hb_001348_140--Hb_002728_020 Hb_009615_110 Hb_009615_110 Hb_001348_140--Hb_009615_110 Hb_000322_170 Hb_000322_170 Hb_000640_210--Hb_000322_170 Hb_000076_290 Hb_000076_290 Hb_000640_210--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000640_210--Hb_000174_200 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_000282_150 Hb_000282_150 Hb_000500_290--Hb_000282_150 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_004232_010 Hb_004232_010 Hb_000500_290--Hb_004232_010 Hb_000500_290--Hb_009615_110 Hb_011537_040 Hb_011537_040 Hb_000500_290--Hb_011537_040 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_000264_060--Hb_009615_110 Hb_000173_370 Hb_000173_370 Hb_002728_020--Hb_000173_370 Hb_089140_080 Hb_089140_080 Hb_002728_020--Hb_089140_080 Hb_000692_170 Hb_000692_170 Hb_002728_020--Hb_000692_170 Hb_000188_190 Hb_000188_190 Hb_002728_020--Hb_000188_190 Hb_002025_140 Hb_002025_140 Hb_002728_020--Hb_002025_140 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_000270_450 Hb_000270_450 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
407.059 142.336 49.3602 32.7511 362.255 342.503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
233.528 74.9113 48.2672 41.5031 20.1564

CAGE analysis