Hb_001348_160

Information

Type -
Description -
Location Contig1348: 135913-137654
Sequence    

Annotation

kegg
ID rcu:RCOM_1030930
description Photosystem II 22 kDa protein, chloroplast precursor, putative
nr
ID XP_002513761.1
description Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q02060
description Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1
trembl
ID B9RJ42
description Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1030930 PE=4 SV=1
Gene Ontology
ID GO:0009517
description photosystem ii 22 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09817: 135552-138002 , PASA_asmbl_09819: 136060-136354
cDNA
(Sanger)
(ID:Location)		 003_F19.ab1: 135997-137745 , 006_E09.ab1: 136019-137708 , 028_O11.ab1: 136053-137739 , 029_F04.ab1: 136138-137743 , 037_H10.ab1: 135975-137740 , 037_I09.ab1: 135961-137702 , 038_I02.ab1: 136049-137743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_160 0.0 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_010697_020 0.0400734588 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001191_060 0.0451634972 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
4 Hb_002809_030 0.0543883601 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001269_480 0.058302996 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
6 Hb_031862_220 0.0594923169 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
7 Hb_000373_210 0.0598239542 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_000251_160 0.0602420414 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_086022_020 0.0614572315 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
10 Hb_003186_030 0.0614829945 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
11 Hb_002818_130 0.0616781833 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001310_020 0.0646938236 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
13 Hb_001049_130 0.0650118037 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
14 Hb_001053_070 0.065089906 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
15 Hb_000320_370 0.065126608 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
16 Hb_002374_480 0.06593695 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_004129_170 0.0675079509 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
18 Hb_004452_070 0.0677794215 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
19 Hb_003033_020 0.0695944953 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
20 Hb_180007_010 0.0712528121 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001348_160 Hb_001348_160 Hb_010697_020 Hb_010697_020 Hb_001348_160--Hb_010697_020 Hb_001191_060 Hb_001191_060 Hb_001348_160--Hb_001191_060 Hb_002809_030 Hb_002809_030 Hb_001348_160--Hb_002809_030 Hb_001269_480 Hb_001269_480 Hb_001348_160--Hb_001269_480 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_002301_070 Hb_002301_070 Hb_010697_020--Hb_002301_070 Hb_003787_030 Hb_003787_030 Hb_010697_020--Hb_003787_030 Hb_000928_260 Hb_000928_260 Hb_010697_020--Hb_000928_260 Hb_010697_020--Hb_001191_060 Hb_010697_020--Hb_001269_480 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_000352_230 Hb_000352_230 Hb_002809_030--Hb_000352_230 Hb_000320_370 Hb_000320_370 Hb_002809_030--Hb_000320_370 Hb_000307_100 Hb_000307_100 Hb_002809_030--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_002809_030--Hb_000098_040 Hb_002809_030--Hb_001191_060 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_001310_020 Hb_000221_130 Hb_000221_130 Hb_001269_480--Hb_000221_130 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_001049_130 Hb_001049_130 Hb_031862_220--Hb_001049_130 Hb_001053_070 Hb_001053_070 Hb_031862_220--Hb_001053_070 Hb_031862_220--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_031862_220--Hb_001936_100 Hb_000987_030 Hb_000987_030 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150 Hb_000373_210--Hb_001053_070 Hb_000373_210--Hb_001049_130 Hb_002374_480 Hb_002374_480 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_000373_210--Hb_001936_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 38.2599 1496.47 938.271 0 0.236873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4742 1.17756 0 0.559008 4420.1

CAGE analysis