Hb_001348_180

Information

Type -
Description -
Location Contig1348: 149103-152950
Sequence    

Annotation

kegg
ID rcu:RCOM_1030780
description hypothetical protein
nr
ID XP_012078247.1
description PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
swissprot
ID A8WGS4
description TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
trembl
ID A0A067KLY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12096 PE=4 SV=1
Gene Ontology
ID GO:0005739
description tlc domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09823: 149175-152929 , PASA_asmbl_09827: 150886-151265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_180 0.0 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
2 Hb_001959_070 0.0752092014 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
3 Hb_004837_030 0.0875219631 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
4 Hb_163950_030 0.0926784335 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
5 Hb_000173_290 0.0946117804 - - guanylate kinase, putative [Ricinus communis]
6 Hb_004619_080 0.095586665 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
7 Hb_007811_030 0.1010565468 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_054865_120 0.101933882 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_009694_010 0.1049704876 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000606_090 0.1080486691 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_011021_020 0.1087687541 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
12 Hb_002947_030 0.1094685681 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
13 Hb_005847_060 0.109525986 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
14 Hb_007632_030 0.1124662247 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
15 Hb_000922_330 0.112568712 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
16 Hb_000054_090 0.1127068267 - - zinc finger protein, putative [Ricinus communis]
17 Hb_004884_070 0.1135093406 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
18 Hb_001811_140 0.113992775 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
19 Hb_007672_060 0.1142103466 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
20 Hb_008748_040 0.114977966 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001348_180 Hb_001348_180 Hb_001959_070 Hb_001959_070 Hb_001348_180--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_001348_180--Hb_004837_030 Hb_163950_030 Hb_163950_030 Hb_001348_180--Hb_163950_030 Hb_000173_290 Hb_000173_290 Hb_001348_180--Hb_000173_290 Hb_004619_080 Hb_004619_080 Hb_001348_180--Hb_004619_080 Hb_007811_030 Hb_007811_030 Hb_001348_180--Hb_007811_030 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_002205_070 Hb_002205_070 Hb_001959_070--Hb_002205_070 Hb_001959_070--Hb_004837_030 Hb_000236_070 Hb_000236_070 Hb_001959_070--Hb_000236_070 Hb_009694_010 Hb_009694_010 Hb_004837_030--Hb_009694_010 Hb_004837_030--Hb_163950_030 Hb_007632_030 Hb_007632_030 Hb_004837_030--Hb_007632_030 Hb_028227_020 Hb_028227_020 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_005847_060 Hb_005847_060 Hb_004619_080--Hb_005847_060 Hb_002168_060 Hb_002168_060 Hb_004619_080--Hb_002168_060 Hb_005054_060 Hb_005054_060 Hb_004619_080--Hb_005054_060 Hb_010583_020 Hb_010583_020 Hb_004619_080--Hb_010583_020 Hb_013726_020 Hb_013726_020 Hb_004619_080--Hb_013726_020 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_007811_030--Hb_000054_090 Hb_007811_030--Hb_000173_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0339 9.20091 25.3815 31.2807 38.1989 44.3558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.4681 35.1453 28.449 9.88335 38.5368

CAGE analysis