Hb_001348_190

Information

Type -
Description -
Location Contig1348: 154725-159190
Sequence    

Annotation

kegg
ID cit:102606628
description chlorophyllide a oxygenase, chloroplastic-like
nr
ID XP_012078248.1
description PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
swissprot
ID Q8S7E1
description Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1
trembl
ID A0A067KKL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12097 PE=4 SV=1
Gene Ontology
ID GO:0009706
description chlorophyllide a chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09829: 154727-159190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_190 0.0 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
2 Hb_000559_020 0.08489961 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
3 Hb_000703_290 0.0852378329 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_002686_240 0.0991256418 - - Thioredoxin, putative [Ricinus communis]
5 Hb_004096_240 0.0997039571 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
6 Hb_003752_070 0.100903068 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
7 Hb_000640_160 0.1019705869 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_003462_070 0.1020921001 - - arsenical pump-driving atpase, putative [Ricinus communis]
9 Hb_027905_020 0.1031799984 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
10 Hb_000663_020 0.1053395792 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001195_270 0.105787848 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_000826_030 0.1079592913 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
13 Hb_001660_120 0.1096490254 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
14 Hb_001158_160 0.109954908 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
15 Hb_000120_210 0.111019742 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
16 Hb_001377_040 0.1118682714 - - chitinase, putative [Ricinus communis]
17 Hb_077026_010 0.1123759995 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
18 Hb_000291_180 0.1134080361 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
19 Hb_000920_030 0.114425962 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_001619_050 0.1151475371 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_190 Hb_001348_190 Hb_000559_020 Hb_000559_020 Hb_001348_190--Hb_000559_020 Hb_000703_290 Hb_000703_290 Hb_001348_190--Hb_000703_290 Hb_002686_240 Hb_002686_240 Hb_001348_190--Hb_002686_240 Hb_004096_240 Hb_004096_240 Hb_001348_190--Hb_004096_240 Hb_003752_070 Hb_003752_070 Hb_001348_190--Hb_003752_070 Hb_000640_160 Hb_000640_160 Hb_001348_190--Hb_000640_160 Hb_000559_020--Hb_002686_240 Hb_001377_040 Hb_001377_040 Hb_000559_020--Hb_001377_040 Hb_001005_130 Hb_001005_130 Hb_000559_020--Hb_001005_130 Hb_000538_280 Hb_000538_280 Hb_000559_020--Hb_000538_280 Hb_027905_020 Hb_027905_020 Hb_000559_020--Hb_027905_020 Hb_000703_290--Hb_003752_070 Hb_001623_490 Hb_001623_490 Hb_000703_290--Hb_001623_490 Hb_000663_020 Hb_000663_020 Hb_000703_290--Hb_000663_020 Hb_000291_180 Hb_000291_180 Hb_000703_290--Hb_000291_180 Hb_002218_020 Hb_002218_020 Hb_000703_290--Hb_002218_020 Hb_007479_070 Hb_007479_070 Hb_002686_240--Hb_007479_070 Hb_010812_050 Hb_010812_050 Hb_002686_240--Hb_010812_050 Hb_001662_140 Hb_001662_140 Hb_002686_240--Hb_001662_140 Hb_000205_260 Hb_000205_260 Hb_002686_240--Hb_000205_260 Hb_000120_210 Hb_000120_210 Hb_004096_240--Hb_000120_210 Hb_030414_040 Hb_030414_040 Hb_004096_240--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3368 30.9259 60.8017 35.3434 28.2183 38.9123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.304 16.2881 13.6138 13.5532 59.8282

CAGE analysis