Hb_001348_200

Information

Type -
Description -
Location Contig1348: 160355-160576
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005576
description defensin ec-amp-d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_200 0.0 - - -
2 Hb_012163_030 0.2584771206 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
3 Hb_001998_060 0.2621148006 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_160366_010 0.2628058113 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
5 Hb_000123_200 0.2634491833 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
6 Hb_039112_010 0.2675050235 - - -
7 Hb_000869_110 0.2678393415 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002392_050 0.2678798413 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
9 Hb_115720_010 0.2697686317 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
10 Hb_002099_010 0.2785872747 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
11 Hb_031284_050 0.2857322524 - - -
12 Hb_034587_030 0.2923751046 - - -
13 Hb_018609_040 0.2940196791 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
14 Hb_000270_800 0.2940758419 - - -
15 Hb_075060_030 0.2941243846 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
16 Hb_156850_060 0.2952790432 - - PREDICTED: uncharacterized protein LOC105635248 [Jatropha curcas]
17 Hb_003837_020 0.2961278538 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
18 Hb_002903_010 0.3002050122 - - 60S ribosomal protein L37-3 [Morus notabilis]
19 Hb_000363_270 0.3027431199 - - hypothetical protein PRUPE_ppa024846mg [Prunus persica]
20 Hb_000504_010 0.3029313079 - - oleosin 18.2 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_001348_200 Hb_001348_200 Hb_012163_030 Hb_012163_030 Hb_001348_200--Hb_012163_030 Hb_001998_060 Hb_001998_060 Hb_001348_200--Hb_001998_060 Hb_160366_010 Hb_160366_010 Hb_001348_200--Hb_160366_010 Hb_000123_200 Hb_000123_200 Hb_001348_200--Hb_000123_200 Hb_039112_010 Hb_039112_010 Hb_001348_200--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_001348_200--Hb_000869_110 Hb_000613_150 Hb_000613_150 Hb_012163_030--Hb_000613_150 Hb_000317_530 Hb_000317_530 Hb_012163_030--Hb_000317_530 Hb_008954_010 Hb_008954_010 Hb_012163_030--Hb_008954_010 Hb_006588_010 Hb_006588_010 Hb_012163_030--Hb_006588_010 Hb_001348_110 Hb_001348_110 Hb_012163_030--Hb_001348_110 Hb_000804_030 Hb_000804_030 Hb_012163_030--Hb_000804_030 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_001998_060--Hb_002392_050 Hb_115720_010 Hb_115720_010 Hb_001998_060--Hb_115720_010 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_160366_010--Hb_000123_200 Hb_002099_010 Hb_002099_010 Hb_160366_010--Hb_002099_010 Hb_007416_040 Hb_007416_040 Hb_160366_010--Hb_007416_040 Hb_000175_580 Hb_000175_580 Hb_160366_010--Hb_000175_580 Hb_011349_010 Hb_011349_010 Hb_160366_010--Hb_011349_010 Hb_156554_010 Hb_156554_010 Hb_160366_010--Hb_156554_010 Hb_000123_200--Hb_002099_010 Hb_000123_200--Hb_007416_040 Hb_000123_200--Hb_011349_010 Hb_000123_200--Hb_000175_580 Hb_000123_200--Hb_156554_010 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.598197 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.946097 3.02974 0 0 0

CAGE analysis