Hb_001348_220

Information

Type -
Description -
Location Contig1348: 165840-166340
Sequence    

Annotation

kegg
ID vvi:100242603
description defensin Ec-AMP-D2
nr
ID XP_010250779.1
description PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]
swissprot
ID Q40901
description Defensin-like protein OS=Petunia integrifolia PE=2 SV=1
trembl
ID D7TAI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02030 PE=4 SV=1
Gene Ontology
ID GO:0006952
description defensin ec-amp-d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09834: 165732-166347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_220 0.0 - - PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]
2 Hb_148817_010 0.1537455165 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
3 Hb_004875_040 0.1567970823 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
4 Hb_000099_020 0.1571110736 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
5 Hb_014115_010 0.1599667494 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000761_030 0.1607826322 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
7 Hb_000521_350 0.1608727464 - - unnamed protein product [Vitis vinifera]
8 Hb_000081_030 0.1623385907 - - BnaC09g05810D [Brassica napus]
9 Hb_161981_010 0.163727952 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
10 Hb_095532_010 0.1662237204 - - BnaC05g27570D [Brassica napus]
11 Hb_086122_030 0.1717321846 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
12 Hb_020805_110 0.1719500004 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
13 Hb_046191_010 0.1722575452 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000032_330 0.1732353282 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001821_030 0.174689774 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
16 Hb_000306_050 0.1786656988 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_099448_010 0.1810659258 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_003469_030 0.1821808754 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
19 Hb_005056_030 0.1841696378 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
20 Hb_000230_160 0.1844389487 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_220 Hb_001348_220 Hb_148817_010 Hb_148817_010 Hb_001348_220--Hb_148817_010 Hb_004875_040 Hb_004875_040 Hb_001348_220--Hb_004875_040 Hb_000099_020 Hb_000099_020 Hb_001348_220--Hb_000099_020 Hb_014115_010 Hb_014115_010 Hb_001348_220--Hb_014115_010 Hb_000761_030 Hb_000761_030 Hb_001348_220--Hb_000761_030 Hb_000521_350 Hb_000521_350 Hb_001348_220--Hb_000521_350 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_148817_010--Hb_000521_350 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_148817_010--Hb_004875_040 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_006314_020 Hb_006314_020 Hb_148817_010--Hb_006314_020 Hb_020805_110 Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_001856_150 Hb_001856_150 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_000676_380 Hb_000676_380 Hb_004875_040--Hb_000676_380 Hb_004875_040--Hb_006314_020 Hb_025254_020 Hb_025254_020 Hb_000099_020--Hb_025254_020 Hb_004122_030 Hb_004122_030 Hb_000099_020--Hb_004122_030 Hb_000099_020--Hb_014115_010 Hb_007181_080 Hb_007181_080 Hb_000099_020--Hb_007181_080 Hb_046191_010 Hb_046191_010 Hb_000099_020--Hb_046191_010 Hb_001493_170 Hb_001493_170 Hb_000099_020--Hb_001493_170 Hb_014115_010--Hb_046191_010 Hb_000306_050 Hb_000306_050 Hb_014115_010--Hb_000306_050 Hb_005056_030 Hb_005056_030 Hb_014115_010--Hb_005056_030 Hb_014115_010--Hb_000081_030 Hb_014115_010--Hb_000761_030 Hb_006120_010 Hb_006120_010 Hb_014115_010--Hb_006120_010 Hb_000761_030--Hb_000081_030 Hb_000761_030--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_000761_030--Hb_006268_010 Hb_000230_160 Hb_000230_160 Hb_000761_030--Hb_000230_160 Hb_000487_140 Hb_000487_140 Hb_000761_030--Hb_000487_140 Hb_161981_010 Hb_161981_010 Hb_000521_350--Hb_161981_010 Hb_086122_030 Hb_086122_030 Hb_000521_350--Hb_086122_030 Hb_060272_010 Hb_060272_010 Hb_000521_350--Hb_060272_010 Hb_000059_110 Hb_000059_110 Hb_000521_350--Hb_000059_110 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 25.8723 1.15898 78.7427 1.0912 4.82829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.86639 0 81.6649 0

CAGE analysis