Hb_001349_010

Information

Type -
Description -
Location Contig1349: 2046-7662
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001349_010 0.0 - - -
2 Hb_000934_030 0.0765937611 - - -
3 Hb_001198_030 0.1121353209 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
4 Hb_000733_030 0.1186960415 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
5 Hb_042729_010 0.1390105252 - - -
6 Hb_025087_010 0.1437878049 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
7 Hb_001722_040 0.1464411966 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
8 Hb_000143_050 0.1470523623 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
9 Hb_001153_200 0.1489331404 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
10 Hb_002492_020 0.149516033 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
11 Hb_000085_300 0.1498111933 - - -
12 Hb_030765_020 0.1551423944 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_081245_010 0.1585705887 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
14 Hb_002936_050 0.1619646609 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
15 Hb_003751_120 0.1625487913 - - -
16 Hb_005618_040 0.1640263276 - - -
17 Hb_000363_010 0.1640510354 - - -
18 Hb_000300_400 0.1640972221 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
19 Hb_000809_050 0.1653505825 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
20 Hb_183963_020 0.1670404217 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]

Gene co-expression network

sample Hb_001349_010 Hb_001349_010 Hb_000934_030 Hb_000934_030 Hb_001349_010--Hb_000934_030 Hb_001198_030 Hb_001198_030 Hb_001349_010--Hb_001198_030 Hb_000733_030 Hb_000733_030 Hb_001349_010--Hb_000733_030 Hb_042729_010 Hb_042729_010 Hb_001349_010--Hb_042729_010 Hb_025087_010 Hb_025087_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_000934_030--Hb_042729_010 Hb_000363_010 Hb_000363_010 Hb_000934_030--Hb_000363_010 Hb_004882_020 Hb_004882_020 Hb_000934_030--Hb_004882_020 Hb_002936_050 Hb_002936_050 Hb_000934_030--Hb_002936_050 Hb_005618_040 Hb_005618_040 Hb_000934_030--Hb_005618_040 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_001266_050 Hb_001266_050 Hb_001198_030--Hb_001266_050 Hb_010166_020 Hb_010166_020 Hb_001198_030--Hb_010166_020 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_004650_070 Hb_004650_070 Hb_000733_030--Hb_004650_070 Hb_000733_030--Hb_025087_010 Hb_005000_290 Hb_005000_290 Hb_000733_030--Hb_005000_290 Hb_000809_050 Hb_000809_050 Hb_000733_030--Hb_000809_050 Hb_002897_060 Hb_002897_060 Hb_000733_030--Hb_002897_060 Hb_004206_030 Hb_004206_030 Hb_042729_010--Hb_004206_030 Hb_042729_010--Hb_002936_050 Hb_012725_110 Hb_012725_110 Hb_042729_010--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_042729_010--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_042729_010--Hb_000003_840 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_025087_010--Hb_001722_040 Hb_025087_010--Hb_005000_290 Hb_001722_040--Hb_183963_020 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88014 0.781229 0.0654011 0.0465899 4.15432 1.59213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.07624 6.66293 5.0788 0.996049 0.151899

CAGE analysis