Hb_001349_020

Information

Type -
Description -
Location Contig1349: 25201-28702
Sequence    

Annotation

kegg
ID tcc:TCM_011870
description Leucoanthocyanidin reductase 1
nr
ID XP_012082024.1
description PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
swissprot
ID Q84V83
description Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1
trembl
ID A0A067JZG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18282 PE=4 SV=1
Gene Ontology
ID GO:0000166
description leucoanthocyanidin reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09836: 25246-28639 , PASA_asmbl_09837: 26932-28702 , PASA_asmbl_09838: 25242-26779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001349_020 0.0 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
2 Hb_005679_110 0.0783082162 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_001345_020 0.0890518767 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
4 Hb_000017_320 0.0909100548 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
5 Hb_005730_070 0.0909846723 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
6 Hb_000696_250 0.1004304542 - - PREDICTED: patellin-6 [Jatropha curcas]
7 Hb_002003_010 0.1041131122 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
8 Hb_005766_010 0.1109169751 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_033312_050 0.1126673986 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
10 Hb_001776_070 0.1126683632 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
11 Hb_022092_050 0.11468117 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
12 Hb_002871_050 0.1154708199 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
13 Hb_000096_210 0.1171091942 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
14 Hb_014250_010 0.1174583402 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
15 Hb_000018_120 0.1188567739 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_002304_190 0.1189982268 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
17 Hb_000567_060 0.1211702589 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
18 Hb_003881_020 0.1213205441 - - PREDICTED: stellacyanin-like [Jatropha curcas]
19 Hb_039022_020 0.1233115847 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_083412_010 0.1303298265 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_001349_020 Hb_001349_020 Hb_005679_110 Hb_005679_110 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_000017_320 Hb_000017_320 Hb_001349_020--Hb_000017_320 Hb_005730_070 Hb_005730_070 Hb_001349_020--Hb_005730_070 Hb_000696_250 Hb_000696_250 Hb_001349_020--Hb_000696_250 Hb_002003_010 Hb_002003_010 Hb_001349_020--Hb_002003_010 Hb_002871_050 Hb_002871_050 Hb_005679_110--Hb_002871_050 Hb_000696_030 Hb_000696_030 Hb_005679_110--Hb_000696_030 Hb_001776_070 Hb_001776_070 Hb_005679_110--Hb_001776_070 Hb_000482_070 Hb_000482_070 Hb_005679_110--Hb_000482_070 Hb_005679_110--Hb_001345_020 Hb_014250_010 Hb_014250_010 Hb_001345_020--Hb_014250_010 Hb_002503_050 Hb_002503_050 Hb_001345_020--Hb_002503_050 Hb_001638_150 Hb_001638_150 Hb_001345_020--Hb_001638_150 Hb_000567_060 Hb_000567_060 Hb_001345_020--Hb_000567_060 Hb_000017_320--Hb_002003_010 Hb_002304_190 Hb_002304_190 Hb_000017_320--Hb_002304_190 Hb_005766_010 Hb_005766_010 Hb_000017_320--Hb_005766_010 Hb_000017_320--Hb_005730_070 Hb_002685_100 Hb_002685_100 Hb_000017_320--Hb_002685_100 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_005730_070--Hb_002304_190 Hb_005730_070--Hb_002003_010 Hb_001832_140 Hb_001832_140 Hb_000696_250--Hb_001832_140 Hb_000018_120 Hb_000018_120 Hb_000696_250--Hb_000018_120 Hb_001252_050 Hb_001252_050 Hb_000696_250--Hb_001252_050 Hb_009767_030 Hb_009767_030 Hb_000696_250--Hb_009767_030 Hb_022092_050 Hb_022092_050 Hb_000696_250--Hb_022092_050 Hb_000834_210 Hb_000834_210 Hb_002003_010--Hb_000834_210 Hb_003160_050 Hb_003160_050 Hb_002003_010--Hb_003160_050 Hb_001114_120 Hb_001114_120 Hb_002003_010--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0651673 29.1103 77.6171 54.5113 0.154579 0.0368468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565941 0 0.083918 86.5111 22.1524

CAGE analysis