Hb_001349_030

Information

Type -
Description -
Location Contig1349: 29029-37193
Sequence    

Annotation

kegg
ID tcc:TCM_011872
description Transmembrane Fragile-X-F-associated protein
nr
ID XP_012082022.1
description PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
swissprot
ID Q7M3S9
description RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
trembl
ID A0A067KAS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18281 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transmembrane fragile-x-f-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09839: 28863-31189 , PASA_asmbl_09840: 31301-37177 , PASA_asmbl_09841: 35797-36262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001349_030 0.0 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
2 Hb_000664_110 0.0978205391 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
3 Hb_007800_020 0.098682793 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
4 Hb_000637_140 0.1019591084 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
5 Hb_002400_320 0.1031255497 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002311_190 0.1050895435 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
7 Hb_000588_080 0.1065974325 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
8 Hb_116420_040 0.109206443 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000635_040 0.1092744227 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
10 Hb_044486_020 0.1100735603 - - CASTOR protein [Glycine max]
11 Hb_005381_020 0.111247585 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
12 Hb_001623_110 0.111391519 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
13 Hb_006022_010 0.1128437377 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
14 Hb_000640_070 0.1130731694 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
15 Hb_005895_010 0.1131235225 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
16 Hb_000413_070 0.1133714698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002814_110 0.1137599153 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
18 Hb_000494_080 0.1161666466 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
19 Hb_000608_260 0.1171844461 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
20 Hb_000069_480 0.1180599378 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001349_030 Hb_001349_030 Hb_000664_110 Hb_000664_110 Hb_001349_030--Hb_000664_110 Hb_007800_020 Hb_007800_020 Hb_001349_030--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_001349_030--Hb_000637_140 Hb_002400_320 Hb_002400_320 Hb_001349_030--Hb_002400_320 Hb_002311_190 Hb_002311_190 Hb_001349_030--Hb_002311_190 Hb_000588_080 Hb_000588_080 Hb_001349_030--Hb_000588_080 Hb_010272_010 Hb_010272_010 Hb_000664_110--Hb_010272_010 Hb_012215_010 Hb_012215_010 Hb_000664_110--Hb_012215_010 Hb_005946_210 Hb_005946_210 Hb_000664_110--Hb_005946_210 Hb_000640_070 Hb_000640_070 Hb_000664_110--Hb_000640_070 Hb_001109_060 Hb_001109_060 Hb_000664_110--Hb_001109_060 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_000637_140--Hb_000608_350 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_003038_120 Hb_003038_120 Hb_000637_140--Hb_003038_120 Hb_008406_180 Hb_008406_180 Hb_002400_320--Hb_008406_180 Hb_005977_100 Hb_005977_100 Hb_002400_320--Hb_005977_100 Hb_000212_120 Hb_000212_120 Hb_002400_320--Hb_000212_120 Hb_005015_060 Hb_005015_060 Hb_002400_320--Hb_005015_060 Hb_004531_100 Hb_004531_100 Hb_002400_320--Hb_004531_100 Hb_000703_100 Hb_000703_100 Hb_002400_320--Hb_000703_100 Hb_006022_010 Hb_006022_010 Hb_002311_190--Hb_006022_010 Hb_012262_040 Hb_012262_040 Hb_002311_190--Hb_012262_040 Hb_000503_020 Hb_000503_020 Hb_002311_190--Hb_000503_020 Hb_001623_110 Hb_001623_110 Hb_002311_190--Hb_001623_110 Hb_004738_030 Hb_004738_030 Hb_002311_190--Hb_004738_030 Hb_010315_020 Hb_010315_020 Hb_000588_080--Hb_010315_020 Hb_001059_130 Hb_001059_130 Hb_000588_080--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_001194_020 Hb_001194_020 Hb_000588_080--Hb_001194_020 Hb_044486_020 Hb_044486_020 Hb_000588_080--Hb_044486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01621 3.8998 4.00335 6.50746 3.25863 3.39881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10574 1.44668 0.65869 1.64756 3.47222

CAGE analysis