Hb_001350_010

Information

Type -
Description -
Location Contig1350: 8831-13249
Sequence    

Annotation

kegg
ID rcu:RCOM_0955760
description hypothetical protein
nr
ID XP_012066362.1
description PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23911 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09863: 13008-13237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001350_010 0.0 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
2 Hb_004182_040 0.0794354771 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
3 Hb_003125_160 0.0918230744 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
4 Hb_000627_030 0.0953011852 - - amine oxidase, putative [Ricinus communis]
5 Hb_000486_010 0.1035551678 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
6 Hb_000345_170 0.1057639419 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
7 Hb_007044_080 0.1069189879 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
8 Hb_002174_060 0.1085252226 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
9 Hb_000889_020 0.1089120563 - - ribosome biogenesis protein brix, putative [Ricinus communis]
10 Hb_007218_080 0.1095542981 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
11 Hb_004117_130 0.1111266686 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
12 Hb_000023_220 0.1120096649 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
13 Hb_003333_060 0.1124374786 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
14 Hb_000085_060 0.1129359517 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
15 Hb_000054_090 0.1136530684 - - zinc finger protein, putative [Ricinus communis]
16 Hb_002728_070 0.1137584118 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
17 Hb_000599_110 0.1137874222 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000103_080 0.114935552 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
19 Hb_000367_130 0.1150553626 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009467_060 0.1151427098 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001350_010 Hb_001350_010 Hb_004182_040 Hb_004182_040 Hb_001350_010--Hb_004182_040 Hb_003125_160 Hb_003125_160 Hb_001350_010--Hb_003125_160 Hb_000627_030 Hb_000627_030 Hb_001350_010--Hb_000627_030 Hb_000486_010 Hb_000486_010 Hb_001350_010--Hb_000486_010 Hb_000345_170 Hb_000345_170 Hb_001350_010--Hb_000345_170 Hb_007044_080 Hb_007044_080 Hb_001350_010--Hb_007044_080 Hb_004182_040--Hb_003125_160 Hb_000690_130 Hb_000690_130 Hb_004182_040--Hb_000690_130 Hb_003665_060 Hb_003665_060 Hb_004182_040--Hb_003665_060 Hb_003728_080 Hb_003728_080 Hb_004182_040--Hb_003728_080 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_000230_560 Hb_000230_560 Hb_003125_160--Hb_000230_560 Hb_156973_010 Hb_156973_010 Hb_003125_160--Hb_156973_010 Hb_003125_160--Hb_003665_060 Hb_002918_030 Hb_002918_030 Hb_003125_160--Hb_002918_030 Hb_001369_180 Hb_001369_180 Hb_003125_160--Hb_001369_180 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_012490_030 Hb_012490_030 Hb_000627_030--Hb_012490_030 Hb_000627_030--Hb_000486_010 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_003673_060 Hb_003673_060 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000933_090 Hb_000933_090 Hb_007044_080--Hb_000933_090 Hb_004117_130 Hb_004117_130 Hb_007044_080--Hb_004117_130 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25544 0.684462 1.21185 2.03869 4.13755 4.4666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58367 3.30406 1.69532 2.06267 2.89251

CAGE analysis