Hb_001351_040

Information

Type -
Description -
Location Contig1351: 94896-97694
Sequence    

Annotation

kegg
ID cit:102614611
description branched-chain-amino-acid aminotransferase 2, chloroplastic-like
nr
ID XP_012068145.1
description PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9FYA6
description Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1
trembl
ID A0A067KZD4
description Branched-chain-amino-acid aminotransferase OS=Jatropha curcas GN=JCGZ_15973 PE=3 SV=1
Gene Ontology
ID GO:0004084
description branched-chain-amino-acid aminotransferase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09866: 94897-97683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001351_040 0.0 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
2 Hb_000977_010 0.1478872487 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_010398_010 0.149495026 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
4 Hb_000315_030 0.1699849636 - - carbohydrate binding protein, putative [Ricinus communis]
5 Hb_048848_010 0.1702725099 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
6 Hb_003384_070 0.1753601073 - - PREDICTED: methylesterase 17-like [Populus euphratica]
7 Hb_003640_030 0.1775392303 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
8 Hb_000083_130 0.1801147188 - - hypothetical protein RCOM_0884570 [Ricinus communis]
9 Hb_011716_110 0.1842256743 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
10 Hb_001544_080 0.1881755616 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
11 Hb_002903_130 0.1881790711 - - epoxide hydrolase, putative [Ricinus communis]
12 Hb_003525_020 0.1899651829 - - conserved hypothetical protein [Ricinus communis]
13 Hb_020178_060 0.1922815573 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
14 Hb_029977_050 0.1961223803 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
15 Hb_000189_120 0.1979091087 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
16 Hb_000362_090 0.1980186091 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
17 Hb_000362_110 0.1988356274 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
18 Hb_000120_970 0.1994773957 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
19 Hb_007380_040 0.2053942833 - - receptor-kinase, putative [Ricinus communis]
20 Hb_007785_010 0.2054385124 - - glutathione peroxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001351_040 Hb_001351_040 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_010398_010 Hb_010398_010 Hb_001351_040--Hb_010398_010 Hb_000315_030 Hb_000315_030 Hb_001351_040--Hb_000315_030 Hb_048848_010 Hb_048848_010 Hb_001351_040--Hb_048848_010 Hb_003384_070 Hb_003384_070 Hb_001351_040--Hb_003384_070 Hb_003640_030 Hb_003640_030 Hb_001351_040--Hb_003640_030 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_002903_130 Hb_002903_130 Hb_000977_010--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_000977_010--Hb_000362_110 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_001608_020 Hb_001608_020 Hb_010398_010--Hb_001608_020 Hb_000362_090 Hb_000362_090 Hb_010398_010--Hb_000362_090 Hb_010398_010--Hb_048848_010 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_000315_030--Hb_003384_070 Hb_000061_380 Hb_000061_380 Hb_000315_030--Hb_000061_380 Hb_000315_030--Hb_003640_030 Hb_000640_150 Hb_000640_150 Hb_000315_030--Hb_000640_150 Hb_002477_220 Hb_002477_220 Hb_000315_030--Hb_002477_220 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_141142_010 Hb_141142_010 Hb_003384_070--Hb_141142_010 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_003640_030--Hb_002903_130 Hb_003640_030--Hb_000362_110 Hb_020178_060 Hb_020178_060 Hb_003640_030--Hb_020178_060 Hb_000283_150 Hb_000283_150 Hb_003640_030--Hb_000283_150 Hb_003640_030--Hb_000977_010 Hb_003640_030--Hb_000061_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63251 26.0396 1.5069 10.0355 8.12492 9.55337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526558 0.207135 0.173327 22.5822 3.86077

CAGE analysis