Hb_001351_080

Information

Type -
Description -
Location Contig1351: 130680-133441
Sequence    

Annotation

kegg
ID rcu:RCOM_1585550
description branched-chain amino acid aminotransferase, putative (EC:2.6.1.42)
nr
ID XP_002510033.1
description branched-chain amino acid aminotransferase, putative [Ricinus communis]
swissprot
ID Q9M439
description Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1
trembl
ID B9R6U0
description Branched-chain amino acid aminotransferase, putative OS=Ricinus communis GN=RCOM_1585550 PE=3 SV=1
Gene Ontology
ID GO:0004084
description branched-chain-amino-acid aminotransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001351_080 0.0 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
2 Hb_000086_100 0.154602569 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
3 Hb_001691_150 0.1727327188 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
4 Hb_000525_010 0.1861670297 - - ring finger protein, putative [Ricinus communis]
5 Hb_000665_010 0.1941157078 - - hypothetical protein 20 [Hevea brasiliensis]
6 Hb_000418_070 0.19419877 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_012753_130 0.2036712294 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000457_140 0.2038838049 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
9 Hb_000359_140 0.2117848603 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
10 Hb_003211_010 0.2162903205 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
11 Hb_010831_020 0.2192375009 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_006663_030 0.22156852 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_002739_150 0.2217431839 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
14 Hb_001950_030 0.2234611757 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
15 Hb_000264_360 0.2274939722 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
16 Hb_151463_010 0.2287657404 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
17 Hb_002876_290 0.2323676279 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
18 Hb_002110_040 0.2328159883 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
19 Hb_145629_010 0.2342481395 - - -
20 Hb_156850_070 0.2374516416 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001351_080 Hb_001351_080 Hb_000086_100 Hb_000086_100 Hb_001351_080--Hb_000086_100 Hb_001691_150 Hb_001691_150 Hb_001351_080--Hb_001691_150 Hb_000525_010 Hb_000525_010 Hb_001351_080--Hb_000525_010 Hb_000665_010 Hb_000665_010 Hb_001351_080--Hb_000665_010 Hb_000418_070 Hb_000418_070 Hb_001351_080--Hb_000418_070 Hb_012753_130 Hb_012753_130 Hb_001351_080--Hb_012753_130 Hb_010831_020 Hb_010831_020 Hb_000086_100--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_000086_100--Hb_000886_060 Hb_000086_100--Hb_001691_150 Hb_003038_220 Hb_003038_220 Hb_000086_100--Hb_003038_220 Hb_001493_010 Hb_001493_010 Hb_000086_100--Hb_001493_010 Hb_001691_150--Hb_000525_010 Hb_001691_150--Hb_010831_020 Hb_000025_330 Hb_000025_330 Hb_001691_150--Hb_000025_330 Hb_001691_150--Hb_000665_010 Hb_002739_150 Hb_002739_150 Hb_001691_150--Hb_002739_150 Hb_002837_110 Hb_002837_110 Hb_001691_150--Hb_002837_110 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000525_010--Hb_000025_330 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_096224_040 Hb_096224_040 Hb_000665_010--Hb_096224_040 Hb_000140_070 Hb_000140_070 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580 Hb_000987_140 Hb_000987_140 Hb_000418_070--Hb_000987_140 Hb_017987_020 Hb_017987_020 Hb_000418_070--Hb_017987_020 Hb_011311_020 Hb_011311_020 Hb_000418_070--Hb_011311_020 Hb_000836_270 Hb_000836_270 Hb_000418_070--Hb_000836_270 Hb_000179_140 Hb_000179_140 Hb_000418_070--Hb_000179_140 Hb_002961_060 Hb_002961_060 Hb_012753_130--Hb_002961_060 Hb_000413_010 Hb_000413_010 Hb_012753_130--Hb_000413_010 Hb_000227_240 Hb_000227_240 Hb_012753_130--Hb_000227_240 Hb_011794_040 Hb_011794_040 Hb_012753_130--Hb_011794_040 Hb_001481_120 Hb_001481_120 Hb_012753_130--Hb_001481_120 Hb_000032_620 Hb_000032_620 Hb_012753_130--Hb_000032_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22258 0.568962 0.0132992 0.615437 0.393265 0.525369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122076 0.224063 0.238151 0.179523 0

CAGE analysis