Hb_001352_020

Information

Type -
Description -
Location Contig1352: 45179-50721
Sequence    

Annotation

kegg
ID tcc:TCM_021912
description Cell division protease ftsH isoform 1
nr
ID XP_012074959.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
swissprot
ID Q0DHL4
description ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1
trembl
ID A0A067KKX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09086 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09868: 31359-50498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001352_020 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
2 Hb_000116_260 0.058311777 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
3 Hb_000497_300 0.0586937557 - - peroxisomal membrane protein [Hevea brasiliensis]
4 Hb_000406_130 0.070317697 - - vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_001789_150 0.0715126675 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
6 Hb_000471_110 0.0735983974 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
7 Hb_010344_050 0.0740403603 - - Adagio 1 -like protein [Gossypium arboreum]
8 Hb_003847_030 0.0781653554 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
9 Hb_000327_180 0.0783036586 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
10 Hb_000096_140 0.0796006479 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003376_250 0.081592124 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
12 Hb_004480_100 0.085321848 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
13 Hb_164010_030 0.0860434718 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
14 Hb_007416_060 0.0869769736 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
15 Hb_001242_130 0.0895105465 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
16 Hb_001898_080 0.0904638979 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
17 Hb_004712_130 0.0908087887 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
18 Hb_007044_050 0.0931353453 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
19 Hb_000479_140 0.0943158566 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
20 Hb_000603_080 0.0970382002 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]

Gene co-expression network

sample Hb_001352_020 Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_001352_020--Hb_000116_260 Hb_000497_300 Hb_000497_300 Hb_001352_020--Hb_000497_300 Hb_000406_130 Hb_000406_130 Hb_001352_020--Hb_000406_130 Hb_001789_150 Hb_001789_150 Hb_001352_020--Hb_001789_150 Hb_000471_110 Hb_000471_110 Hb_001352_020--Hb_000471_110 Hb_010344_050 Hb_010344_050 Hb_001352_020--Hb_010344_050 Hb_000116_260--Hb_000497_300 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_164010_030 Hb_164010_030 Hb_000116_260--Hb_164010_030 Hb_000116_260--Hb_000471_110 Hb_000116_260--Hb_000406_130 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_164010_030 Hb_000497_300--Hb_001789_150 Hb_000406_130--Hb_000471_110 Hb_000479_140 Hb_000479_140 Hb_000406_130--Hb_000479_140 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_000471_110--Hb_000479_140 Hb_000471_110--Hb_000497_300 Hb_000471_110--Hb_164010_030 Hb_010344_050--Hb_004712_130 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_007386_040 Hb_007386_040 Hb_010344_050--Hb_007386_040 Hb_000505_150 Hb_000505_150 Hb_010344_050--Hb_000505_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63774 10.9733 5.87361 14.8644 8.4133 9.11682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2229 13.9525 20.9601 14.0689 17.9028

CAGE analysis