Hb_001352_080

Information

Type -
Description -
Location Contig1352: 158729-161756
Sequence    

Annotation

kegg
ID rcu:RCOM_0760990
description hypothetical protein
nr
ID XP_012074957.1
description PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
swissprot
ID O80934
description Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=2 SV=2
trembl
ID B9SYB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0760990 PE=4 SV=1
Gene Ontology
ID GO:0009570
description nad -binding rossmann-fold superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09872: 158747-161894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001352_080 0.0 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
2 Hb_005038_030 0.0816639625 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
3 Hb_001907_070 0.1242734078 - - 50S ribosomal protein L1p, putative [Ricinus communis]
4 Hb_002498_170 0.1335935589 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_001959_240 0.1388687632 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_006911_070 0.1513960046 - - 50S ribosomal protein L1p, putative [Ricinus communis]
7 Hb_006846_160 0.1525120184 - - electron transporter, putative [Ricinus communis]
8 Hb_006618_070 0.160866165 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
9 Hb_004846_050 0.1619757613 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
10 Hb_000322_040 0.163863957 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
11 Hb_005527_010 0.163907987 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000802_050 0.1650105185 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
13 Hb_000061_150 0.1685952563 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_005016_140 0.1691098208 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_002701_120 0.1698266136 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
16 Hb_006252_030 0.1711771513 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
17 Hb_001638_310 0.1716624414 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
18 Hb_007229_030 0.1719983541 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
19 Hb_004871_010 0.1729951711 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
20 Hb_005618_150 0.1756288045 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001352_080 Hb_001352_080 Hb_005038_030 Hb_005038_030 Hb_001352_080--Hb_005038_030 Hb_001907_070 Hb_001907_070 Hb_001352_080--Hb_001907_070 Hb_002498_170 Hb_002498_170 Hb_001352_080--Hb_002498_170 Hb_001959_240 Hb_001959_240 Hb_001352_080--Hb_001959_240 Hb_006911_070 Hb_006911_070 Hb_001352_080--Hb_006911_070 Hb_006846_160 Hb_006846_160 Hb_001352_080--Hb_006846_160 Hb_005038_030--Hb_001907_070 Hb_004846_050 Hb_004846_050 Hb_005038_030--Hb_004846_050 Hb_005618_150 Hb_005618_150 Hb_005038_030--Hb_005618_150 Hb_005038_030--Hb_006911_070 Hb_002016_010 Hb_002016_010 Hb_005038_030--Hb_002016_010 Hb_001907_070--Hb_005618_150 Hb_001907_070--Hb_006911_070 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001723_030 Hb_001723_030 Hb_001907_070--Hb_001723_030 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_001959_240--Hb_002498_170 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_006846_160--Hb_000322_040 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6602 15.5691 215.248 32.8587 82.5243 43.72
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3391 23.3591 18.8979 11.1676 193.242

CAGE analysis