Hb_001352_090

Information

Type -
Description -
Location Contig1352: 163891-166121
Sequence    

Annotation

kegg
ID rcu:RCOM_0760980
description hypothetical protein
nr
ID XP_012074956.1
description PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
swissprot
ID Q9SR32
description UPF0161 protein At3g09310 OS=Arabidopsis thaliana GN=At3g09310 PE=2 SV=2
trembl
ID A0A067KTQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09083 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09873: 164104-166032 , PASA_asmbl_09874: 164104-166032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001352_090 0.0 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
2 Hb_002687_140 0.0800430672 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
3 Hb_001348_070 0.0817076663 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_003142_070 0.0841341549 - - hypothetical protein F383_14657 [Gossypium arboreum]
5 Hb_006623_020 0.0912196662 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
6 Hb_000808_250 0.0917523254 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
7 Hb_000014_170 0.0918620892 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
8 Hb_003126_040 0.0981972255 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000042_210 0.1014411751 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
10 Hb_010368_020 0.1031675416 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
11 Hb_007007_050 0.1079945589 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
12 Hb_005016_090 0.1083717649 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_000390_130 0.1108046135 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
14 Hb_004976_020 0.1108374134 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_003086_070 0.1108903127 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
16 Hb_003849_060 0.1110547021 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
17 Hb_000920_280 0.1130369278 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
18 Hb_001329_130 0.1146844089 - - conserved hypothetical protein [Ricinus communis]
19 Hb_021422_010 0.11613913 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
20 Hb_028900_010 0.1175402619 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001352_090 Hb_001352_090 Hb_002687_140 Hb_002687_140 Hb_001352_090--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_001352_090--Hb_001348_070 Hb_003142_070 Hb_003142_070 Hb_001352_090--Hb_003142_070 Hb_006623_020 Hb_006623_020 Hb_001352_090--Hb_006623_020 Hb_000808_250 Hb_000808_250 Hb_001352_090--Hb_000808_250 Hb_000014_170 Hb_000014_170 Hb_001352_090--Hb_000014_170 Hb_002687_140--Hb_001348_070 Hb_003752_080 Hb_003752_080 Hb_002687_140--Hb_003752_080 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_001348_070--Hb_003752_080 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_001348_070--Hb_002233_150 Hb_000359_330 Hb_000359_330 Hb_003142_070--Hb_000359_330 Hb_003142_070--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_003142_070--Hb_003091_010 Hb_003142_070--Hb_000808_250 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_000808_250--Hb_003849_060 Hb_000808_250--Hb_021422_010 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_000014_170--Hb_003142_070 Hb_000014_170--Hb_006623_020 Hb_000014_170--Hb_003091_010 Hb_000072_140 Hb_000072_140 Hb_000014_170--Hb_000072_140 Hb_000107_170 Hb_000107_170 Hb_000014_170--Hb_000107_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5187 10.8327 18.8236 4.71676 38.942 19.1479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8057 24.7719 9.15964 5.10222 9.16049

CAGE analysis