Hb_001353_010

Information

Type -
Description -
Location Contig1353: 6186-8810
Sequence    

Annotation

kegg
ID rcu:RCOM_1196270
description cytochrome C oxidase assembly protein cox11, putative
nr
ID XP_012065140.1
description PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
swissprot
ID Q8GWR0
description Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thaliana GN=COX11 PE=2 SV=1
trembl
ID A0A067LEA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11167 PE=3 SV=1
Gene Ontology
ID GO:0005507
description cytochrome c oxidase assembly protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09875: 6291-28094 , PASA_asmbl_09876: 6231-28098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001353_010 0.0 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
2 Hb_045003_010 0.0640877905 - - Stomatin-1, putative [Ricinus communis]
3 Hb_001489_110 0.0681092925 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
4 Hb_000808_190 0.071510086 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
5 Hb_002303_060 0.0807648273 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000563_200 0.0823356135 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
7 Hb_025098_010 0.0832831089 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_008841_020 0.0872144027 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
9 Hb_076233_040 0.0877067007 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
10 Hb_186982_040 0.0887797778 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
11 Hb_002995_050 0.0890993845 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
12 Hb_000566_120 0.0897557722 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
13 Hb_002609_200 0.0898435089 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001189_070 0.0905027583 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
15 Hb_185255_010 0.0919796182 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_002042_150 0.0923400425 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_003126_070 0.0934276101 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
18 Hb_003106_100 0.0938335735 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
19 Hb_007928_030 0.0944216918 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
20 Hb_008147_090 0.0946031468 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001353_010 Hb_001353_010 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_002042_150 Hb_002042_150 Hb_045003_010--Hb_002042_150 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_001489_110--Hb_025098_010 Hb_006573_020 Hb_006573_020 Hb_000808_190--Hb_006573_020 Hb_000028_350 Hb_000028_350 Hb_000808_190--Hb_000028_350 Hb_002000_140 Hb_002000_140 Hb_000808_190--Hb_002000_140 Hb_005307_050 Hb_005307_050 Hb_000808_190--Hb_005307_050 Hb_000808_190--Hb_002303_060 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84297 2.26197 5.12139 11.8757 2.68124 5.36891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.58861 13.005 7.21705 6.49649 7.13323

CAGE analysis